Factsheet for Solyc04g008660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013119	Potato	cytosol	20.1	75.48
PGSC0003DMT400076862	Potato	cytosol	11.4	68.99
PGSC0003DMT400008126	Potato	cytosol	17.67	64.49
Bra019896.1-P	Field mustard	cytosol	59.8	60.65
CDX97917	Canola	cytosol	59.54	60.47
CDY19326	Canola	cytosol	59.28	60.21
KRH24228	Soybean	cytosol	59.8	60.18
KRH29237	Soybean	cytosol	59.54	59.92
AT1G10870.2	Thale cress	cytosol	59.8	59.87
AT1G60860.1	Thale cress	cytosol	58.9	59.28
CDY40502	Canola	cytosol	57.87	59.24
Bra027124.1-P	Field mustard	cytosol	56.47	57.95
CDY54764	Canola	cytosol	56.47	57.87
GSMUA_Achr1P01960_001	Banana	cytosol	57.75	57.6
TraesCS6D01G213800.1	Wheat	cytosol	55.31	56.62
TraesCS6A01G221400.1	Wheat	cytosol	55.31	56.62
TraesCS6B01G259800.1	Wheat	cytosol	55.44	56.45
Os02t0632500-01	Rice	cytosol, plasma membrane	54.67	56.18
Solyc12g042180.1.1	Tomato	cytosol	16.01	55.8
HORVU6Hr1G059210.10	Barley	cytosol, plastid	47.25	52.12
OQU85359	Sorghum	cytosol, mitochondrion, plastid	55.7	51.85
Zm00001d051188_P001	Maize	cytosol	8.71	51.52
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	46.22	50.42
Zm00001d051187_P009	Maize	plastid	44.3	49.08
Solyc05g023750.2.1	Tomato	cytosol	46.99	44.92
Solyc03g118260.1.1	Tomato	cytosol	45.45	44.38
Solyc12g042170.1.1	Tomato	cytosol	29.32	42.25
Solyc03g098500.2.1	Tomato	nucleus	8.58	27.02
Solyc07g063550.2.1	Tomato	cytosol	10.63	17.47
Solyc08g005070.2.1	Tomato	cytosol	8.32	16.17
Solyc10g006850.2.1	Tomato	cytosol	9.86	15.4
Solyc03g006610.2.1	Tomato	cytosol	9.09	15.24
Solyc08g076920.2.1	Tomato	nucleus	7.55	14.32
Solyc09g010520.2.1	Tomato	nucleus	7.94	13.28
Solyc10g084690.1.1	Tomato	mitochondrion	7.55	12.85

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:BAR_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148
InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	UniProt:K4BP22	PFAM:PF00169
PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003
PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PFscan:PS51021	PANTHER:PTHR23180	PANTHER:PTHR23180:SF244
SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403
SUPFAM:SSF50729	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc04g008660.2	EnsemblPlants:Solyc04g008660.2.1	UniParc:UPI0002767314	:

Description

No Description!

Coordinates

chr4:+:2289220..2305938

Molecular Weight (calculated)

87794.4 Da

IEP (calculated)

6.966

GRAVY (calculated)

-0.415

Length

781 amino acids

Sequence
(BLAST)

001: MSMAAFIKLE DSPMFQKQVR GLEQTTDDLR DRCQKLYKGC KKYMEVLGET QNGDIMFAES LEAFGGGLDD PLSVSLGGPI IMKFISALRE LATYKELIRS
101: QVEHVLVDRV CQFLSDDLRD VKESRRRFDK AASTYDQARE RFSSLKKNAR DEVVTELEEE LHNSKSTFER SRFNLVNAIT NVDAKKKYEF LESFSAIMDA
201: HLRYFKLGHD LLSQMEPFIH QVLTYAQQSK EQASIEQDKL AKRIQEFRTQ AELNHLRGSS NLGTSTSSIA SNGVGMNSDK NIEAIMQSSA EGAVQTIKQG
301: YLLKRSSSLR ADWKRRFFVL DSLGNLYYYR IKGAQMGSPS SHPSGVDNHS SVFGRFRTKY RSSSAGEENL GCRTVDLHTS TIKLDAEDTD LRLCFRIISP
401: LKSYTLQAES EAERVDWMNK ITGVIASLLN SHLQKFDASK NDIDGSKNTY AASLNVQGAV NDEKALASVR VNQPDSVSKI LREVPGNDKC ADCGASEPDW
501: ASLNLGILIC IECSGIHRNL GVHISKVRSI TLDVRVWEPT ILDLFRTLGN SYCNSVWEEL LQLPNDELTN VDAIQSASKP SPKDAFHEKE KYILAKYVEK
601: QVVNKEAFAP YSNRATLIWE AVRSNKVKDV YQIIVVSDVN IINTIYDEVE GATMYHEIHE NDSKLGLQDS QKKHQNPAAC QGIKLCLQGC SLLHLACNGE
701: TPVMLELLLQ FGSDINRRDF HGRTPLQHCI GNGRHHLAKF LLRRGARASI KDYGGLSALD RAMEMGAIKD EELFILLTKS E

Best Arabidopsis Sequence Match ( AT1G60860.1 )
(BLAST)

001: MAGFINLEDS PMFQKQVFSL EGTSDELKDR CQKLYKGVKK FMGALGEAST GVSAFADSLE EFGAGHDDPV SVSIGGPVIS KFINTLRELS SYKEFLRSQV
101: EHVLLERLTN FMTVDLQEAK ESRRRFDKAV HSYDQAREKF VSLKKNTRGD IVAELEEDLE NSKSAFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDSHF
201: KYFKLGYDLL SQLEPYIHQV LTYAQQSKEQ SKIEQDRFAQ RIQEFRTQSE LDSQQASAKA DPSDVGGNHV YRAIPRKNVE ANSVSTADKE VTKQGYLLKR
301: SASLRADWKR RFFVLDNHGS LYYYRNTGNK SAKSQHYYSG LGEHSSGVFG RFRTRHNRSA SQGSLDCNMI DLRTSLIKLD AEDTDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITAAI TIRLNSHFLQ QSPARYLDKK NTSSGPATEN LTLNQKEDYN QRLNVGDDVL TILREIPGNN TCAECNAPDP DWASLNLGVL
501: MCIECSGVHR NLGVHISKVR SLTLDVKVWE PTILDLFRNL GNGYCNSVWE ELLHHLDDDS EKGSTDTLAS VSKPSSEDWF TLKEKYINGK YLEKALVVKD
601: EREANSTASS RIWEAVQSRN IRDIYRLIVK ADANIINTKF DDITDLDVYH HHHVDAPDEV KKRHDPNACQ RIKNSNEARN CLQGCSLLHV ACQSGDPILL
701: ELLLQFGADI NMRDYHGRTP LHHCIASGNN AFAKVLLRRG ARPSIEDGGG LSVLERAMEM GAITDEELFL LLAECQ

Arabidopsis Description

AGD2ADP-ribosylation factor GTPase-activating protein AGD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.