Factsheet for Solyc03g006610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012918	Potato	cytosol	89.91	90.11
CDY71222	Canola	cytosol	16.52	80.21
Solyc03g098500.2.1	Tomato	nucleus	21.67	40.73
Solyc07g063550.2.1	Tomato	cytosol	39.06	38.32
VIT_00s0404g00040.t01	Wine grape	cytosol	40.56	37.28
Os07t0563800-02	Rice	cytosol	37.34	36.55
GSMUA_Achr8P07470_001	Banana	cytosol	36.91	36.52
EER99548	Sorghum	cytosol	36.48	35.94
Zm00001d021802_P001	Maize	cytosol	36.7	35.7
TraesCS2A01G203600.1	Wheat	cytosol	36.27	35.58
TraesCS2B01G230900.1	Wheat	cytosol	36.27	35.58
TraesCS2D01G212100.1	Wheat	cytosol	36.27	35.58
Solyc10g006850.2.1	Tomato	cytosol	37.55	35.0
Zm00001d006602_P001	Maize	cytosol	36.27	34.07
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	34.76	34.03
GSMUA_Achr5P26280_001	Banana	cytosol	34.12	33.69
Solyc08g005070.2.1	Tomato	cytosol	13.95	16.17
Solyc10g084690.1.1	Tomato	mitochondrion	15.45	15.69
Solyc09g010520.2.1	Tomato	nucleus	15.45	15.42
Solyc08g076920.2.1	Tomato	nucleus	13.52	15.29
Solyc12g042170.1.1	Tomato	cytosol	14.59	12.55
Solyc05g023750.2.1	Tomato	cytosol	16.95	9.67
Solyc03g118260.1.1	Tomato	cytosol	16.52	9.62
Solyc04g008660.2.1	Tomato	cytosol	15.24	9.09
Solyc12g042180.1.1	Tomato	cytosol	0.86	1.79

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:K4BE84	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc03g006610.2	EnsemblPlants:Solyc03g006610.2.1
UniParc:UPI0002767B7B	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:1187252..1192617

Molecular Weight (calculated)

51101.4 Da

IEP (calculated)

10.264

GRAVY (calculated)

-0.609

Length

466 amino acids

Sequence
(BLAST)

001: MNEKSRVSKE LNAKHTKILE GLLKLPQNRE CADCKARGPR WASVNLGIFI CLHCSGVHRS LGVHISKVRS ATLDTWLPDQ VAFIQTMGNQ KSNSYWEAEL
101: PAKSDRVGIE NFIRAKYVEK RWIPRNESVK SSPGARGERN SASKTGTARD AAYIKRTMSL YQERKSSPLP DADRTTLALR NRLHNAPSES PKQLAAPDPK
201: PEVVQNAKPV ASVEEPKPKA NVSPDPRENV HQNVEPSISQ VAKAKPEANF SPTLSISTIN HAASVSKSYT EASKANDSVS KTQPVASPKP AEAKAVIQQN
301: ATIVNKNKFD AGIEELIKDF QWNTQTVSAK PLNNVTNEQK TSPAPHQPQL MPATMNHFSS SQTAYQSSNV NQYIPQNWGS IGTQVIHGTK QMGGTQYIHA
401: STPPAYAMNP SMFSAMQVVP ILHGTTTTTA GAIRPLSSFP TVPVVSMQSG YNYDFSSLTH QMLSRR

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.