Factsheet for Solyc12g042170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009353_P001	Maize	cytosol	11.99	53.72
Solyc03g118260.1.1	Tomato	cytosol	73.43	49.75
Zm00001d015981_P001	Maize	peroxisome	13.84	49.02
Zm00001d004245_P003	Maize	cytosol	15.68	44.27
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	57.2	41.89
VIT_01s0150g00030.t01	Wine grape	cytosol	63.28	41.23
KRH45201	Soybean	cytosol	62.55	41.19
CDY53619	Canola	cytosol	25.46	40.95
KRH01512	Soybean	cytosol	62.18	40.17
Solyc05g023750.2.1	Tomato	cytosol	60.15	39.9
GSMUA_Achr11P...	Banana	cytosol	58.67	38.97
Zm00001d049871_P001	Maize	cytosol	13.47	38.22
Os09t0510700-01	Rice	cytosol	58.3	37.8
TraesCS5A01G293000.1	Wheat	cytosol	57.75	37.67
GSMUA_Achr4P00060_001	Banana	cytosol	57.93	37.51
TraesCS5B01G292200.1	Wheat	cytosol	57.56	37.41
HORVU5Hr1G077570.15	Barley	cytosol	57.56	37.28
TraesCS5D01G300300.2	Wheat	cytosol	57.56	37.14
EER99172	Sorghum	cytosol	56.46	36.6
Zm00001d021087_P003	Maize	cytosol	56.46	36.56
TraesCS7A01G263800.2	Wheat	cytosol	54.24	35.72
Zm00001d049872_P001	Maize	cytosol	36.16	35.7
HORVU7Hr1G055220.21	Barley	cytosol	54.61	35.62
Os08t0537600-01	Rice	plasma membrane	54.61	35.62
Zm00001d031667_P006	Maize	cytosol	54.06	35.6
OQU80812	Sorghum	cytosol	53.87	35.44
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	54.24	34.71
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	54.24	34.71
Solyc04g008660.2.1	Tomato	cytosol	42.25	29.32
Solyc03g098500.2.1	Tomato	nucleus	11.62	25.4
Zm00001d023982_P001	Maize	cytosol	17.34	24.16
Zm00001d015278_P001	Maize	mitochondrion	13.65	22.02
Solyc07g063550.2.1	Tomato	cytosol	15.5	17.68
Solyc10g006850.2.1	Tomato	cytosol	14.39	15.6
Solyc03g006610.2.1	Tomato	cytosol	12.55	14.59
Solyc10g084690.1.1	Tomato	mitochondrion	11.81	13.94
Solyc09g010520.2.1	Tomato	nucleus	11.62	13.49
Solyc08g005070.2.1	Tomato	cytosol	9.96	13.43
Solyc08g076920.2.1	Tomato	nucleus	9.96	13.11
CDY08879	Canola	cytosol	2.58	4.44
Solyc12g042180.1.1	Tomato	cytosol	0.37	0.89

Protein Annotations

Gene3D:1.25.40.20	Gene3D:2.30.29.30	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR011993	InterPro:IPR020683
InterPro:IPR036770	InterPro:IPR038508	UniProt:K4DF11	PFAM:PF00169	PFAM:PF01412	PFAM:PF13637
InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115
PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00105	SMART:SM00233	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc12g042170.1	EnsemblPlants:Solyc12g042170.1.1	UniParc:UPI000276A99B

Description

No Description!

Coordinates

chr12:+:40672573..40680360

Molecular Weight (calculated)

60594.2 Da

IEP (calculated)

8.601

GRAVY (calculated)

-0.404

Length

542 amino acids

Sequence
(BLAST)

001: MVLTFAQRAR ESSTHEQVVL NEKMQEYKKE VDQQSRRSLN SPHNSSTAEI TQHSSRSSQK VIEAVMQSAA EGKVETIKQG YLSKRSSNLR GDWKRRFFVL
101: DSRGMLYYYR TLRSRSSFQG SSNPLSSHYH GGVHDEKPVA HRTVNLLTST IKADAEQSDL RFCFRIISPT KSYTLQAESI AEQMVWIEKI TGVITSLLSS
201: QTPERDQRTI EECTSGRDFI AKSSIRQSKS VSHLPSMKVE KPTDALKRIP GNDKCADCGA PDPDWASLNL GILICIECSG IHRKFGVHIS KVRSLALDVK
301: VWEPSVIILF QALGNVFVNS IWEGLLHPRR NFQADEIPMR SLESHKHKQF SCKPSEDDHI SVKEKFIHGK YAEKKFVHKV EDSEHLLSVA QQLWEGVRKN
401: DKKTVYRLIV VYQADVNAVH GQASLGSDCA NSLNPRGGSA DLSSDGFFDG CSLLHLACQT ADIGMVELLL QHGANINACD LRGQIPLHHS FLRGRTEIAK
501: LLLSRGANPQ AVDKEGKTPF HLVQESALDD VEIIALLKVA IG

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.