Factsheet for Zm00001d049871_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004245_P003
Zm00001d009353_P001
Zm00001d009504_P002
Zm00001d013705_P001
Zm00001d013996_P003
Zm00001d015278_P001
Zm00001d015981_P001
Zm00001d021087_P003
Zm00001d023982_P001
Zm00001d030661_P001
Zm00001d031667_P006
Zm00001d033283_P001
Zm00001d038955_P001
Zm00001d039404_P001
Zm00001d045530_P001
Zm00001d049871_P001
Zm00001d049872_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	Zm00001d013705_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d030661_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d033283_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d004245_P003	AT5G13300.1	15743878
AT5G13300.1	Zm00001d009353_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d015278_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d015981_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d021087_P003	AT5G13300.1	15743878
AT5G13300.1	Zm00001d023982_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d031667_P006	AT5G13300.1	15743878
AT5G13300.1	Zm00001d049871_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d049872_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d013996_P003	AT5G26980.1	15743878
AT5G13300.1	Zm00001d039404_P001	AT5G26980.1	15743878
AT5G13300.1	Zm00001d045530_P001	AT5G26980.1	15743878
AT5G13300.1	Zm00001d009504_P002	AT5G42080.1	15923323
AT5G13300.1	Zm00001d038955_P001	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051188_P001	Maize	cytosol	24.61	35.61
CDY53619	Canola	cytosol	42.93	24.33
Zm00001d031667_P006	Maize	cytosol	88.48	20.53
OQU80812	Sorghum	cytosol	87.43	20.27
HORVU7Hr1G055220.21	Barley	cytosol	72.77	16.73
TraesCS7A01G263800.2	Wheat	cytosol	71.73	16.65
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	71.2	16.06
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	71.2	16.06
Os08t0537600-01	Rice	plasma membrane	69.11	15.88
Zm00001d021087_P003	Maize	cytosol	65.44	14.93
Solyc12g042170.1.1	Tomato	cytosol	38.22	13.47
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	47.64	12.3
PGSC0003DMT400036762	Potato	cytosol	37.17	12.16
GSMUA_Achr11P...	Banana	cytosol	51.83	12.13
GSMUA_Achr4P00060_001	Banana	cytosol	50.79	11.59
KRH45201	Soybean	cytosol	48.17	11.18
VIT_01s0150g00030.t01	Wine grape	cytosol	47.64	10.94
CDY09784	Canola	cytosol	45.03	10.78
VIT_17s0000g00310.t01	Wine grape	cytosol	46.6	10.76
KRH01512	Soybean	cytosol	47.12	10.73
PGSC0003DMT400005756	Potato	cytosol	45.03	10.53
AT5G13300.1	Thale cress	cytosol	45.55	10.52
Bra006193.1-P	Field mustard	cytosol	44.5	10.46
CDX69650	Canola	cytosol	45.03	10.41
Bra008838.1-P	Field mustard	cytosol	45.03	10.41
Solyc05g023750.2.1	Tomato	cytosol	43.98	10.28
CDX78515	Canola	cytosol	44.5	10.23
CDX86943	Canola	cytosol	37.17	9.97
Bra010046.1-P	Field mustard	cytosol	39.27	9.48
Solyc03g118260.1.1	Tomato	cytosol	38.74	9.25
AT5G61980.1	Thale cress	cytosol	39.79	9.18
CDY00242	Canola	cytosol	37.7	9.15
Bra029295.1-P	Field mustard	cytosol	40.84	9.05
CDY30689	Canola	cytosol	40.84	9.05
KRH59741	Soybean	cytosol	36.65	8.75
KRH63858	Soybean	cytosol	34.55	8.41
KRH54108	Soybean	cytosol	30.37	7.86
Zm00001d021802_P001	Maize	cytosol	15.71	6.26
Zm00001d006602_P001	Maize	cytosol	16.23	6.25
Zm00001d004245_P003	Maize	cytosol	5.24	5.21
Zm00001d034885_P002	Maize	cytosol	10.99	5.05
Zm00001d012827_P002	Maize	cytosol	10.47	4.75
Zm00001d030031_P002	Maize	plastid	11.52	4.55
Zm00001d047020_P002	Maize	cytosol	10.47	4.55
CDY08879	Canola	cytosol	7.33	4.44
Zm00001d007856_P001	Maize	cytosol	6.28	4.41
Zm00001d047793_P001	Maize	extracellular, plasma membrane	9.42	3.97
Zm00001d028656_P001	Maize	mitochondrion	8.38	3.52
Zm00001d046873_P001	Maize	cytosol, plastid	8.9	3.2
Zm00001d051030_P001	Maize	cytosol, plastid	8.9	3.2
Zm00001d016547_P001	Maize	cytosol, plastid	8.9	3.2
Zm00001d016932_P001	Maize	endoplasmic reticulum	2.09	2.19
Zm00001d031462_P001	Maize	endoplasmic reticulum, extracellular	2.09	2.09
Zm00001d051187_P009	Maize	plastid	5.76	1.56
Zm00001d015278_P001	Maize	mitochondrion	2.62	1.49
Solyc12g042180.1.1	Tomato	cytosol	1.05	0.89
Zm00001d049872_P001	Maize	cytosol	1.05	0.36
CDX70496	Canola	cytosol	1.05	0.36
Zm00001d032879_P001	Maize	extracellular	0.0	0.0
Zm00001d023982_P001	Maize	cytosol	0.0	0.0
Zm00001d015981_P001	Maize	peroxisome	0.0	0.0
Zm00001d009353_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	UniProt:A0A1D6PYG9	ProteinID:AQK51499.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF242
SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0008434993	EnsemblPlantsGene:Zm00001d049871	EnsemblPlants:Zm00001d049871_P001	EnsemblPlants:Zm00001d049871_T001

Description

discolored kernel1 discolored kernel1

Coordinates

chr4:-:49806179..49807432

Molecular Weight (calculated)

20832.7 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.409

Length

191 amino acids

Sequence
(BLAST)

001: MDENQLAQQM WNSVAANDKK AAYSLIVRSR ANVNLVHGEI HSSPFLTLGK ALQQEQPASP PVGSPRFFDC NSHDKISREP LSPASTSSCR DGMEDGCEGL
101: SLLHLACRVA DVGMVELLLQ YGASVNMNDS MGRTPLHHCI LKGRHRHAKL LLSRGADSQA MDRDGRTALQ YAINGGTSDE DILALLQDHS R

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.