Factsheet for Zm00001d016932_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031462_P001	Maize	endoplasmic reticulum, extracellular	90.16	86.39
CDX86944	Canola	cytosol	33.88	47.33
GSMUA_Achr8P00540_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	60.66	43.19
Zm00001d049872_P001	Maize	cytosol	70.49	23.5
Zm00001d031667_P006	Maize	cytosol	72.13	16.04
Zm00001d021087_P003	Maize	cytosol	67.21	14.7
Zm00001d015278_P001	Maize	mitochondrion	18.58	10.12
Zm00001d051187_P009	Maize	plastid	38.25	9.93
Zm00001d032879_P001	Maize	extracellular	3.28	2.76
GSMUA_Achr8P00550_001	Banana	cytosol	7.65	2.49
Zm00001d049871_P001	Maize	cytosol	2.19	2.09
Zm00001d051188_P001	Maize	cytosol	1.09	1.52
Zm00001d016547_P001	Maize	cytosol, plastid	3.83	1.32
Zm00001d046873_P001	Maize	cytosol, plastid	3.83	1.32
Zm00001d051030_P001	Maize	cytosol, plastid	3.83	1.32
Zm00001d030031_P002	Maize	plastid	3.28	1.24
Zm00001d012827_P002	Maize	cytosol	2.19	0.95
Zm00001d047793_P001	Maize	extracellular, plasma membrane	2.19	0.88
Zm00001d028656_P001	Maize	mitochondrion	2.19	0.88
Zm00001d021802_P001	Maize	cytosol	2.19	0.84
Zm00001d006602_P001	Maize	cytosol	2.19	0.81
Zm00001d023982_P001	Maize	cytosol	1.64	0.77
Zm00001d007856_P001	Maize	cytosol	1.09	0.74
Zm00001d034885_P002	Maize	cytosol	1.64	0.72
Zm00001d047020_P002	Maize	cytosol	1.64	0.68
Zm00001d004245_P003	Maize	cytosol	0.55	0.52
Zm00001d015981_P001	Maize	peroxisome	0.0	0.0
Zm00001d009353_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d016932_P001	EnsemblPlants:Zm00001d016932_T001	EnsemblPlantsGene:Zm00001d016932	Gene3D:1.20.1270.60	InterPro:AH/BAR_dom_sf	InterPro:IPR027267
ncoils:Coil	PANTHER:PTHR23180	PANTHER:PTHR23180:SF242	PFAM:PF16746	ProteinID:AQK71993.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF103657	UniParc:UPI0008438293	UniProt:A0A1D6HBB5	MapMan:35.1	:

Description

ADP-ribosylation factor GTPase-activating protein AGD1

Coordinates

chr5:+:180328682..180331002

Molecular Weight (calculated)

20257.1 Da

IEP (calculated)

5.281

GRAVY (calculated)

-0.040

Length

183 amino acids

Sequence
(BLAST)

001: MCSRAFACVC CASVLHLHVV ELPVSQIQSL EESAELLRER CLKFHKGCRK YAEGLGEAYD GDIAFASSLE TFGGGHNDPI SVAFGGLVMT KFTIALREIG
101: TYKEVLRSQV ECLLNDRLLN FVDIDLHDVN DAHKRFDKAS LSYDQEVLEA TRQQLERELS LRISIASMTS LSATFCTNST NGS

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.