Factsheet for VIT_17s0000g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0150g00030.t01	Wine grape	cytosol	68.92	68.51
Zm00001d049872_P001	Maize	cytosol	43.17	65.03
GSMUA_Achr11P...	Banana	cytosol	63.97	64.83
CDY00242	Canola	cytosol	60.1	63.15
AT5G61980.1	Thale cress	cytosol	62.76	62.68
Solyc03g118260.1.1	Tomato	cytosol	60.58	62.62
TraesCS5A01G293000.1	Wheat	cytosol	62.88	62.58
GSMUA_Achr4P00060_001	Banana	cytosol	63.12	62.37
TraesCS5B01G292200.1	Wheat	cytosol	62.76	62.23
Os09t0510700-01	Rice	cytosol	62.88	62.2
TraesCS5D01G300300.2	Wheat	cytosol	62.76	61.79
CDX86943	Canola	cytosol	53.08	61.66
Bra010046.1-P	Field mustard	cytosol	58.77	61.44
PGSC0003DMT400036762	Potato	cytosol	43.29	61.3
HORVU5Hr1G077570.15	Barley	cytosol	62.03	61.29
EER99172	Sorghum	cytosol	61.91	61.24
CDY30689	Canola	cytosol	63.36	60.79
Bra029295.1-P	Field mustard	cytosol	63.36	60.79
Zm00001d021087_P003	Maize	cytosol	61.43	60.69
TraesCS7A01G263800.2	Wheat	cytosol	60.1	60.39
OQU80812	Sorghum	cytosol	60.1	60.32
Zm00001d031667_P006	Maize	cytosol	59.98	60.27
HORVU7Hr1G055220.21	Barley	cytosol	60.46	60.17
Os08t0537600-01	Rice	plasma membrane	59.49	59.21
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	52.72	58.92
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	59.61	58.21
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	59.61	58.21
Zm00001d009353_P001	Maize	cytosol	8.46	57.85
Zm00001d015981_P001	Maize	peroxisome	10.16	54.9
Zm00001d004245_P003	Maize	cytosol	11.12	47.92
Zm00001d015278_P001	Maize	mitochondrion	19.23	47.32
Zm00001d049871_P001	Maize	cytosol	10.76	46.6
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	34.46	39.8
Zm00001d023982_P001	Maize	cytosol	15.11	32.13
VIT_17s0053g00430.t01	Wine grape	cytosol	7.98	25.58
VIT_19s0014g03510.t01	Wine grape	cytosol	9.92	17.15
VIT_00s0404g00040.t01	Wine grape	cytosol	10.04	16.37
VIT_02s0012g01330.t01	Wine grape	cytosol	7.62	15.56
VIT_08s0007g00010.t01	Wine grape	mitochondrion	7.38	13.12
VIT_00s0250g00050.t01	Wine grape	plastid	6.77	13.05

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	EntrezGene:100254173	wikigene:100254173	MapMan:22.3.4.1	Gene3D:3.30.40.160
InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	ProteinID:CBI15750	ProteinID:CBI15750.3	ncoils:Coil
UniProt:D7SH70	EMBL:FN594950	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007010	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0030139	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267
InterPro:IPR036770	InterPro:IPR038508	EntrezGene:LOC100254173	wikigene:LOC100254173	PFAM:PF00169	PFAM:PF01412
PFAM:PF12796	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088
PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF373	SMART:SM00105	SMART:SM00233
SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863
UniParc:UPI0001BE0FC1	ArrayExpress:VIT_17s0000g00310	EnsemblPlantsGene:VIT_17s0000g00310	EnsemblPlants:VIT_17s0000g00310.t01	RefSeq:XP_002280846	RefSeq:XP_002280846.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:201292..212911

Molecular Weight (calculated)

92782.9 Da

IEP (calculated)

7.484

GRAVY (calculated)

-0.480

Length

827 amino acids

Sequence
(BLAST)

001: MQLAKLDDSP MLRNQIECLE ENAESLKERT MKFYKGCRKY AEGLGEGYNG DVAFANALEA FGGCHNDPLS VAFGDSVVKK FTGALREIGT YKETLRAEVE
101: HVLTDRLLHF VDVDLHDVKE ARKRFDKAIP MYDQAREKFL SLRKSTRMDI AQATEEELHN ARSIFEQARF NLVSAISNVE AKKRFEFLEA VSVTMAAHLR
201: FFRQGYELLN QMEPYINQVL GYAQQSRESS NYEQASLIEK MQDYIRQIDY KSKLALNGSY ASPNDVGMQP FNRKSHKEIE AVMQSAAKGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQW NRSFVSHYLE DIFQHSNEPG SGLLSRWLSS HYHGGVHDEK SVTQHTVNLL TATIKLDADQ SDLRFCFRII
401: SPTKNYTLQA ENALDQMDWV EKITGVIASL LSSDALERRL SGSSTGSSDQ QPANQSCSPG SSSHLDQTVI EEHASKNLTS GNYARASRSL QQRKCSGKNE
501: KPIDVLRRVR GNDKCADCGA PEPDWASLNL GVLICIECSG IHRNLGVHIS KVRSLVLDVK VWEPSVLTLF LALGNNYANS IWEDLLNPDD TPVDSPTSDK
601: SKLSLMSKPG HDDPISVKEI FIHAKYAEKR FVRKIKDSQH LHSIAQKMCR SVRYNDTKAV YRNIVSSEVD VNAIHGKASS NTFLTLAEVM KLQEQVSVDN
701: KFDFLVDSSL GKASSSSSDK PSTTEDQSME GCHDGCSLLH LACQAADIGM VELLLQYGAD INASDSMGQT PLHHCIIRGR TAIAKILLKR GADPQAVDKE
801: GKTPLRLVAE STIDDSEVLA LLKQTNR

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.