Factsheet for VIT_17s0053g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15700	Soybean	cytosol	45.74	60.82
KRH38902	Soybean	cytosol	51.16	54.32
KRH09434	Soybean	cytosol	49.22	52.05
KRH41906	Soybean	cytosol	54.26	46.82
AT3G17660.2	Thale cress	nucleus	41.09	43.09
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	38.76	42.55
CDX92147	Canola	cytosol	41.09	41.73
CDX95838	Canola	cytosol	41.09	41.73
Bra021263.1-P	Field mustard	cytosol	43.41	40.88
Solyc03g098500.2.1	Tomato	nucleus	38.76	40.32
VIT_19s0014g03510.t01	Wine grape	cytosol	48.84	26.36
VIT_00s0404g00040.t01	Wine grape	cytosol	50.39	25.64
VIT_02s0012g01330.t01	Wine grape	cytosol	21.32	13.58
VIT_08s0007g00010.t01	Wine grape	mitochondrion	22.09	12.26
VIT_00s0250g00050.t01	Wine grape	plastid	20.16	12.12
VIT_17s0000g00310.t01	Wine grape	cytosol	25.58	7.98
VIT_01s0150g00030.t01	Wine grape	cytosol	25.19	7.81
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	18.22	6.56

Protein Annotations

EntrezGene:100266762	wikigene:100266762	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	ProteinID:CCB58795	ProteinID:CCB58795.1	UniProt:F6HVT2	EMBL:FN596258	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	EntrezGene:LOC100266762	wikigene:LOC100266762	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI000210A1AB
ArrayExpress:VIT_17s0053g00430	EnsemblPlantsGene:VIT_17s0053g00430	EnsemblPlants:VIT_17s0053g00430.t01	RefSeq:XP_002267042	RefSeq:XP_002267042.1	SEG:seg

Description

No Description!

Coordinates

chr17:+:15114077..15135389

Molecular Weight (calculated)

29375.9 Da

IEP (calculated)

10.072

GRAVY (calculated)

-0.775

Length

258 amino acids

Sequence
(BLAST)

001: MNEKASVSKE LNAKHSKILE GLLKQPENRE CADCRSKAPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS TTLDTWLPEQ VAFMQSMGNE RSNDYWEANL
101: PPNYDRSENE RFIRAKYVEK KWVSKKATQP TTKPSEKSSN FHKSMESGTR SGIRSKTRKL SLEEEIFTNH IAQIAPPAGR TRWGSLDLNK ISPPEKGPPF
201: TGCNTSLNKG NATTDLFHLP YVQDAKPRRS IASSSYYSSW ATFECKNKPY FYPMLYKL

Best Arabidopsis Sequence Match ( AT3G17660.2 )
(BLAST)

001: MNRKASVSKE LNAKHSKILE ALLKHPDNRE CADCRSKAPR WASVNLGIFI CMQCSGIHRS LGVHISQVRS ITLDTWLPDQ VAFMKSTGNA KGNEYWESEL
101: PQHFERSSSD TFIRAKYSEK RWVSPGAIQP APIVSQLSCK VSHLVESGYK PETPKKARTL SLDEEILLHH VLQVTPPETR TRAGSVDMKE NVYVVPLPEF
201: KKPNQKNENF SSEVNQNRRT TIAPPSSWAT FDCKAMIQAF LFFIFC

Arabidopsis Description

AGD15ARF-GAP domain 15 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR18]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.