Factsheet for PGSC0003DMT400026308

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
endoplasmic reticulum 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098500.2.1	Tomato	nucleus	97.87	92.74
KRH15700	Soybean	cytosol	40.43	48.97
CDX92147	Canola	cytosol	44.68	41.34
CDX95838	Canola	cytosol	44.26	40.94
KRH38902	Soybean	cytosol	42.13	40.74
AT3G17660.2	Thale cress	nucleus	42.55	40.65
KRH09434	Soybean	cytosol	41.28	39.75
VIT_17s0053g00430.t01	Wine grape	cytosol	42.55	38.76
Bra021263.1-P	Field mustard	cytosol	42.55	36.5
KRH41906	Soybean	cytosol	42.98	33.78
PGSC0003DMT400076862	Potato	cytosol	18.3	33.33
PGSC0003DMT400049649	Potato	cytosol	48.51	24.0
PGSC0003DMT400064425	Potato	cytosol	47.23	23.57
PGSC0003DMT400013119	Potato	cytosol	19.57	22.12
PGSC0003DMT400012918	Potato	cytosol	43.4	21.94
PGSC0003DMT400008126	Potato	cytosol	18.72	20.56
PGSC0003DMT400068809	Potato	plastid	12.77	13.89
PGSC0003DMT400045159	Potato	cytosol	21.7	12.38
PGSC0003DMT400002955	Potato	cytosol	20.85	12.07
PGSC0003DMT400023046	Potato	mitochondrion	23.4	11.78
PGSC0003DMT400028571	Potato	mitochondrion	22.13	11.33
PGSC0003DMT400036762	Potato	cytosol	24.26	9.76
PGSC0003DMT400037441	Potato	cytosol	13.19	9.06
PGSC0003DMT400037443	Potato	cytosol	7.23	8.33
PGSC0003DMT400005756	Potato	cytosol	28.94	8.32

Protein Annotations

EntrezGene:102600506	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	UniProt:M1AN02	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400010153
PGSC:PGSC0003DMG400010153	EnsemblPlants:PGSC0003DMT400026308	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160
SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI000296D7B5	RefSeq:XP_006353940.1	:	:

Description

ARF-GAP domain 15 [Source:PGSC_GENE;Acc:PGSC0003DMG400010153]

Coordinates

chr3:+:44550569..44553718

Molecular Weight (calculated)

26421.3 Da

IEP (calculated)

8.206

GRAVY (calculated)

-0.609

Length

235 amino acids

Sequence
(BLAST)

001: MNDKASVSKE LNAKHAKILE GLLKLPENRE CADCRGRAPR WASINLGIFI CLQCSGIHRS LGVHISKVRS TTLDTWLPEQ ISFMQCVGNE KSNNYWEADL
101: SASVDRSDIG KFIRTKYQDK KWASRYNPQP GLSDMIGETS DFGGKADVPR KARKYSLEED VFSIQPPQVP TTTRSRGVSL DTMDEFLNLP PKNGLMSAPS
201: VKHKEDTQDL FSLLYAPEGN QDRTIVPPSR WATFE

Best Arabidopsis Sequence Match ( AT3G17660.1 )
(BLAST)

001: MNRKASVSKE LNAKHSKILE ALLKHPDNRE CADCRSKAPR WASVNLGIFI CMQCSGIHRS LGVHISQVRS ITLDTWLPDQ VAFMKSTGNA KGNEYWESEL
101: PQHFERSSSD TFIRAKYSEK RWVSPGAIQP APIVSQLSCK VSHLVESGYK PETPKKARTL SLDEEILLHH VLQVTPPETR TRAGSVDMKE NVYVVPLPEF
201: KKPNQKNENF SSEVNQNRRT TIAPPSSWAT FD

Arabidopsis Description

AGD15ARF-GAP domain 15 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR18]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.