Factsheet for PGSC0003DMT400068809

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
plasma membrane 1
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013119	Potato	cytosol	37.5	38.94
PGSC0003DMT400076862	Potato	cytosol	20.83	34.88
PGSC0003DMT400037441	Potato	cytosol	41.2	26.02
PGSC0003DMT400008126	Potato	cytosol	22.69	22.9
PGSC0003DMT400036762	Potato	cytosol	42.13	15.58
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	13.89	12.77
PGSC0003DMT400005756	Potato	cytosol	44.91	11.87
PGSC0003DMT400064425	Potato	cytosol	14.35	6.58
PGSC0003DMT400049649	Potato	cytosol	14.35	6.53
PGSC0003DMT400012918	Potato	cytosol	13.89	6.45
PGSC0003DMT400002955	Potato	cytosol	12.04	6.4
PGSC0003DMT400045159	Potato	cytosol	11.11	5.83
PGSC0003DMT400028571	Potato	mitochondrion	12.04	5.66
PGSC0003DMT400023046	Potato	mitochondrion	12.04	5.57
PGSC0003DMT400037443	Potato	cytosol	0.46	0.49

Protein Annotations

Gene3D:2.30.29.30	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR011993	InterPro:IPR038508	UniProt:M1CJI8
PFAM:PF00169	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400026761	PGSC:PGSC0003DMG400026761	EnsemblPlants:PGSC0003DMT400068809	InterPro:PH-like_dom_sf
InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF230
SMART:SM00105	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0002965700	:	:

Description

Gcn4-complementing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026761]

Coordinates

chr4:+:3779075..3784365

Molecular Weight (calculated)

23734.8 Da

IEP (calculated)

6.383

GRAVY (calculated)

-0.305

Length

216 amino acids

Sequence
(BLAST)

001: MKVFPGHSFA YSIYFLSYCQ GSPSSHPSGV DNHSSVFGRF RTKYRSSSTG EENLGCRTVD LHTSTIKLDA EDTDLRLCFR IISPLKSYTL QAESEAERVD
101: WMNKITGVIA SLLNSHLQKF DASKNDIDSS NNTYAGSLNV QGSVNDENAL ASVRVNQPDS VSKILREVPG NDKCSDCGAS EPDWASLNLG ILICIECSGI
201: HRNLGVHISK VYLYPC

Best Arabidopsis Sequence Match ( AT1G10870.1 )
(BLAST)

001: MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCE DGSALSHASV SKPCPEDSFS VKEKYILGKY LEKALVIKDE
601: SEANLSAASR IWEAVQSRNI REIYRLIVTT GDVNIINTKF DDITDIDAYH HIDAAEKAVK KRHDPTVCQR IKESNEPRSC LQGCSLLHVA CHIGDSVLLE
701: LLLQFGADLN IRDYHGRTPL HHCISSGNHK FAKILLRRGA RPSIEDDGGL SVLERAMEMG AITDEELFLL LAECA

Arabidopsis Description

AGD4ARF-GAP domain 4 [Source:TAIR;Acc:AT1G10870]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.