Factsheet for PGSC0003DMT400023046

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
golgi 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010520.2.1	Tomato	nucleus	98.29	98.29
PGSC0003DMT400028571	Potato	mitochondrion	73.88	75.16
VIT_08s0007g00010.t01	Wine grape	mitochondrion	67.88	68.17
AT3G53710.2	Thale cress	cytosol	63.38	64.49
GSMUA_AchrUn_...	Banana	mitochondrion	57.82	63.68
KRH32302	Soybean	mitochondrion	64.88	63.26
KRH19707	Soybean	cytosol	64.88	62.99
AT2G37550.1	Thale cress	mitochondrion	61.03	62.5
Zm00001d007856_P001	Maize	cytosol	36.4	62.5
KRG95812	Soybean	endoplasmic reticulum	64.67	61.76
KRH67539	Soybean	mitochondrion	64.03	61.52
Zm00001d047793_P001	Maize	extracellular, plasma membrane	59.31	61.15
Os03t0278400-01	Rice	plasma membrane	58.46	60.26
GSMUA_Achr7P15230_001	Banana	cytosol	56.32	60.18
Zm00001d028656_P001	Maize	mitochondrion	58.24	59.91
EER92462	Sorghum	mitochondrion	58.46	59.74
GSMUA_Achr9P04020_001	Banana	mitochondrion	61.46	59.67
TraesCS4A01G099400.1	Wheat	mitochondrion	58.46	58.58
TraesCS4B01G204900.1	Wheat	mitochondrion	58.03	58.41
TraesCS4D01G205800.1	Wheat	mitochondrion	58.46	58.33
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	54.39	55.82
CDY23645	Canola	cytosol	19.27	55.56
CDY16083	Canola	cytosol	27.62	54.66
GSMUA_Achr10P...	Banana	mitochondrion	46.25	54.41
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	44.54	52.53
Bra026910.1-P	Field mustard	plastid	20.34	52.49
CDY26647	Canola	plastid	20.34	52.49
HORVU4Hr1G059060.2	Barley	mitochondrion	58.46	47.4
PGSC0003DMT400076862	Potato	cytosol	7.07	25.58
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	11.78	23.4
PGSC0003DMT400045159	Potato	cytosol	19.27	21.84
PGSC0003DMT400002955	Potato	cytosol	18.2	20.94
PGSC0003DMT400049649	Potato	cytosol	17.34	17.05
PGSC0003DMT400013119	Potato	cytosol	7.49	16.83
PGSC0003DMT400008126	Potato	cytosol	7.49	16.36
PGSC0003DMT400064425	Potato	cytosol	16.49	16.35
PGSC0003DMT400012918	Potato	cytosol	15.63	15.7
PGSC0003DMT400037443	Potato	cytosol	6.0	13.73
PGSC0003DMT400068809	Potato	plastid	5.57	12.04
PGSC0003DMT400036762	Potato	cytosol	13.28	10.62
PGSC0003DMT400005756	Potato	cytosol	15.2	8.69
PGSC0003DMT400037441	Potato	cytosol	5.35	7.31
Zm00001d032879_P001	Maize	extracellular	0.86	1.84

Protein Annotations

EntrezGene:102577536	MapMan:22.3.4.2	Gene3D:3.30.40.160	ProteinID:ABA46771	ProteinID:ABA46771.1	InterPro:ARFGAP/RecO
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	EMBL:DQ200378	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488
GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508
UniProt:M1AHN7	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400008921	PGSC:PGSC0003DMG400008921	EnsemblPlants:PGSC0003DMT400023046	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0002957E01
RefSeq:XP_006341048.1	RefSeq:XP_006341050.1	SEG:seg	:	:	:

Description

Arf gtpase-activating protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008921]

Coordinates

chr9:-:2021152..2025289

Molecular Weight (calculated)

50452.6 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.870

Length

467 amino acids

Sequence
(BLAST)

001: MASSRRLRDL QAQPGNKICV DCSQKNPQWA SVSYGVFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIR KMELGGNESF NKFVLQYGIP KETDIVTKYN
101: TKAATVYRDR IQSLAEGKPW RDPPVVKEVL GGSASNNGSR PPLSSGASGG GSRNGGWDSW DNNDDGGFSG SNTKDIRRNQ TVGDFRSGGS SGGAPARSRS
201: TADISKEQYE ASAANKDNFF ARRMAENESR PDGLPPSQGG KYVGFGSNPA PMPRNNMNQQ GDVFSAVTQG FGRLSMIAAT AAQSAASVVQ VGTKELTSKV
301: KEGGYDTKVN ETVNVVTAKT SEIGQKSWGI MKGVLAMASQ KVEEYTKESP AWKNDSWQRG ESEKNGYYQD FNQDSKGWNA SGGAQSSGRN VNSVSSGSWD
401: DWDNEDKSKV NPTKAAAAPN NKNDDWAGWD DGQDDGFDNH YQSASNNKHA TVHAGKSDSK WTDGGFL

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.