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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 3
  • golgi 2
  • mitochondrion 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, golgi, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:golgi
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:golgi, nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH67539 Soybean mitochondrion 93.46 94.03
KRH19707 Soybean cytosol 73.82 75.05
KRH32302 Soybean mitochondrion 73.21 74.74
VIT_08s0007g00010.t01 Wine grape mitochondrion 66.67 70.11
AT3G53710.2 Thale cress cytosol 62.37 66.45
AT2G37550.1 Thale cress mitochondrion 61.35 65.79
Solyc09g010520.2.1 Tomato nucleus 62.17 65.1
GSMUA_AchrUn_... Banana mitochondrion 56.44 65.09
Solyc10g084690.1.1 Tomato mitochondrion 60.94 64.92
PGSC0003DMT400023046 Potato mitochondrion 61.76 64.67
PGSC0003DMT400028571 Potato mitochondrion 60.53 64.49
Os03t0278400-01 Rice plasma membrane 58.08 62.69
EER92462 Sorghum mitochondrion 58.08 62.14
Zm00001d007856_P001 Maize cytosol 34.56 62.13
Zm00001d047793_P001 Maize extracellular, plasma membrane 57.26 61.81
GSMUA_Achr7P15230_001 Banana cytosol 55.21 61.78
Zm00001d028656_P001 Maize mitochondrion 56.85 61.23
TraesCS4A01G099400.1 Wheat mitochondrion 56.85 59.66
TraesCS4D01G205800.1 Wheat mitochondrion 56.65 59.19
TraesCS4B01G204900.1 Wheat mitochondrion 55.83 58.84
GSMUA_Achr9P04020_001 Banana mitochondrion 57.46 58.42
CDY23645 Canola cytosol 19.02 57.41
GSMUA_Achr5P28610_001 Banana endoplasmic reticulum, vacuole 52.97 56.92
GSMUA_Achr10P... Banana mitochondrion 46.01 56.68
CDY16083 Canola cytosol 25.77 53.39
GSMUA_Achr7P10440_001 Banana cytosol, plastid 42.94 53.03
CDY26647 Canola plastid 18.61 50.28
Bra026910.1-P Field mustard plastid 18.61 50.28
HORVU4Hr1G059060.2 Barley mitochondrion 56.85 48.26
KRH15700 Soybean cytosol 9.41 23.71
KRH75607 Soybean cytosol 17.79 21.59
KRH45437 Soybean endoplasmic reticulum, mitochondrion 17.59 21.34
KRH38902 Soybean cytosol 10.02 20.16
KRH09434 Soybean cytosol 9.82 19.67
KRH22157 Soybean cytosol 17.59 17.88
KRH26038 Soybean cytosol 18.2 17.8
KRH27179 Soybean cytosol 16.97 17.15
KRH41906 Soybean cytosol 10.22 16.72
KRH55419 Soybean cytosol 16.97 16.09
KRH30767 Soybean nucleus 6.34 12.76
KRH63858 Soybean cytosol 13.09 8.15
KRH59741 Soybean cytosol 13.09 8.0
KRH29237 Soybean cytosol 12.68 7.99
KRH45201 Soybean cytosol 12.88 7.65
KRH24228 Soybean cytosol 12.07 7.6
KRH01512 Soybean cytosol 12.88 7.51
KRH54108 Soybean cytosol 11.04 7.32
Zm00001d032879_P001 Maize extracellular 0.82 1.84
Protein Annotations
EntrezGene:100778302MapMan:22.3.4.2Gene3D:3.30.40.160EMBL:ACUP02012138InterPro:ARFGAP/RecOInterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sfEnsemblPlantsGene:GLYMA_19G172700GO:GO:0003674GO:GO:0005096GO:GO:0005488GO:GO:0008150
GO:GO:0030234GO:GO:0043547GO:GO:0046872UniProt:I1N9Z5InterPro:IPR001164InterPro:IPR038508
EnsemblPlants:KRG95812ProteinID:KRG95812ProteinID:KRG95812.1PFAM:PF01412PRINTS:PR00405PFscan:PS50115
PANTHER:PTHR23180PANTHER:PTHR23180:SF35SMART:SM00105SUPFAM:SSF57863UniParc:UPI000233F17DSEG:seg
Description
hypothetical protein
Coordinates
chr19:-:43337906..43341948
Molecular Weight (calculated)
53257.5 Da
IEP (calculated)
7.957
GRAVY (calculated)
-0.943
Length
489 amino acids
Sequence
(BLAST)
001: MAASRRLRDL QSQPANKICV DCSQKNPQWA SVSYGVFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMEAGGNDKL NAFLLQYGIP KETDIVAKYN
101: SNAASVYRDR IQALADGRPW RDPPVVKEAV RSSSAAFKGK PPLSASSNNN GGWDNWDADD GFGSARGGSD LRRNQSTGDV RGFGGGGNVA RSKSTQDIYT
201: RAELEASAAN KEEFFARKRA ENESRPEGLP PSQGGKYVGF GSGPAPPQRG NQQNDYFSVV SQGLGKLSLA AASAANVVQA GTKELSAKVK EGGYDYKVNE
301: TVNVVSQKTT EIGQRTWGMM KGVMALASQK VEEFARDNPN WTSDNWQRNE SDRNGFYQEF NRENNGRNSS TREGQHSSGG QTNTFHSSSW DDWGHNDFRK
401: EEPAKGSAPQ SSGGKFDNYN SSSWDDWDQE DTRKKEPAKG SSARSSDGWA GWDNAKDDGF DDIYGSASNS KGVTHNDKSG AAWTGGGFL
Best Arabidopsis Sequence Match ( AT2G37550.1 )
(BLAST)
001: MAAARRLRTL QSQPENKVCV DCSQKNPQWA SISYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMDAGGNERL NNFLAQYGIS KETDIISKYN
101: SNAASVYRDR IQALAEGRQW RDPPIVKESV GGGLMNKKPP LSQGGGRDSG NGGWDNWDND DSFRSTDMRR NQSAGDFRSS GGRGAPAKSK SSEDIYSRSQ
201: LEASAANKES FFAKRMAENE SKPEGLPPSQ GGKYVGFGSS PGPAPRSNQQ SGGGDVFSVM SEGFGRLSLV AASAANVVQT GTMEFTSKVK EGGLDQTVSE
301: TVNVVASKTT EIGQRTWGIM KGVMAIASQK VEEFTKEEAS TWNQQNKTEG NGYYQNSGIG NKTANSSFGG SQSSSSGHNN SYRNSNSWDD WGEENNSKKE
401: AAPKVSTSND DDDGGWAGWD DNDAKDDDFY YQPASDKKSV GHNGKSDTAW TGGGFL
Arabidopsis Description
AGD7ADP-ribosylation factor GTPase-activating protein AGD7 [Source:UniProtKB/Swiss-Prot;Acc:O80925]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.