CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75607	Soybean	cytosol	96.77	96.77
VIT_02s0012g01330.t01	Wine grape	cytosol	80.15	79.75
PGSC0003DMT400002955	Potato	cytosol	72.7	72.17
Solyc08g005070.2.1	Tomato	cytosol	71.96	72.14
PGSC0003DMT400045159	Potato	cytosol	72.46	70.87
Solyc08g076920.2.1	Tomato	nucleus	71.96	70.39
GSMUA_Achr2P18150_001	Banana	cytosol	69.48	69.31
Bra013265.1-P	Field mustard	cytosol	67.74	69.29
AT4G17890.1	Thale cress	cytosol	70.97	69.25
CDX78809	Canola	cytosol	67.0	69.05
CDY44506	Canola	cytosol	67.74	68.94
CDX90439	Canola	cytosol	69.48	68.29
GSMUA_Achr11P...	Banana	cytosol	67.99	68.16
CDY01499	Canola	cytosol	68.73	68.06
EER91883	Sorghum	cytosol	68.73	68.06
GSMUA_Achr4P21720_001	Banana	cytosol	68.49	67.98
CDX77687	Canola	cytosol	67.49	67.66
AT5G46750.1	Thale cress	cytosol	67.0	67.16
Bra024999.1-P	Field mustard	cytosol	60.79	67.12
CDY58500	Canola	cytosol	66.75	67.08
Os10t0574800-01	Rice	plasma membrane	67.49	66.83
GSMUA_Achr4P28870_001	Banana	cytosol	66.75	66.58
EER90493	Sorghum	cytosol	67.74	65.62
AT2G35210.1	Thale cress	cytosol	64.27	65.57
TraesCS1A01G193000.1	Wheat	cytosol	65.51	65.19
TraesCS1D01G196700.1	Wheat	cytosol	65.26	64.94
Os03t0854100-01	Rice	cytosol	66.0	64.56
Zm00001d034885_P002	Maize	cytosol	66.0	63.94
Zm00001d012827_P002	Maize	cytosol	66.0	63.18
Zm00001d047020_P002	Maize	cytosol	67.99	62.27
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	63.28	61.59
CDY59045	Canola	cytosol	60.05	61.58
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	62.78	61.11
Bra017330.1-P	Field mustard	cytosol	59.31	60.66
Zm00001d030031_P002	Maize	plastid	68.24	56.94
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	65.26	55.84
TraesCS5B01G554600.1	Wheat	cytosol, plastid	63.52	55.41
HORVU5Hr1G123590.1	Barley	cytosol	63.52	52.57
Bra012634.1-P	Field mustard	cytosol	69.73	27.47
KRH15700	Soybean	cytosol	12.66	26.29
HORVU1Hr1G047800.23	Barley	plastid	21.09	25.15
KRH09434	Soybean	cytosol	13.4	22.13
KRH38902	Soybean	cytosol	13.15	21.81
KRH32302	Soybean	mitochondrion	22.08	18.58
KRH19707	Soybean	cytosol	22.08	18.5
KRH67539	Soybean	mitochondrion	21.34	17.7
KRH22157	Soybean	cytosol	21.09	17.67
KRG95812	Soybean	endoplasmic reticulum	21.34	17.59
KRH26038	Soybean	cytosol	21.59	17.4
KRH27179	Soybean	cytosol	20.84	17.36
KRH41906	Soybean	cytosol	12.66	17.06
KRH55419	Soybean	cytosol	20.35	15.89
KRH30767	Soybean	nucleus	7.44	12.35
KRH59741	Soybean	cytosol	15.63	7.88
KRH45201	Soybean	cytosol	15.38	7.53
KRH24228	Soybean	cytosol	14.39	7.47
KRH29237	Soybean	cytosol	14.14	7.35
KRH01512	Soybean	cytosol	15.14	7.27
KRH63858	Soybean	cytosol	13.9	7.13
KRH54108	Soybean	cytosol	11.66	6.37

Protein Annotations

EntrezGene:100785169	MapMan:22.3.4.2	Gene3D:3.30.40.160	EMBL:ACUP02005224	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	EnsemblPlantsGene:GLYMA_08G271700	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	UniProt:I1KX25	InterPro:IPR001164	InterPro:IPR038508
EnsemblPlants:KRH45437	ProteinID:KRH45437	ProteinID:KRH45437.1	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0002338407	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:35501547..35507217

Molecular Weight (calculated)

43390.6 Da

IEP (calculated)

9.432

GRAVY (calculated)

-0.604

Length

403 amino acids

Sequence
(BLAST)

001: MASDGFTDKN TVFRKLKAKS ENKMCFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SPEQLKTMSF GGNNRAQVFF KQHGWNDGGK
101: IEAKYTSRAA DLYRQILSKE VAKSMAEDGG LPSSPVASQS SQGVNGLPEV KTNEVPKENI LEKPEKPEST SSPRASHTVI SSTVKKPIGA KKAVKSGGLG
201: ARKLTKKPSE SLYEQKPEEP PAPVSSSTNN MPAGPSPTSR FEYVENVQSS ELNTGGSHLL SHVSPPKSSS FFADFGMDSG FPKKSGPSSS KVQIQETDEA
301: RRKFSNAKSI SSSQYFGDQN KAADVDSQAT LSKFSGSSAI SSADLFGDSR DNNIDLTAGD LINRLSFQAQ QDLSSLKNIA GETGKKLSSL ASTLMTDLQD
401: RIL

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.