Factsheet for TraesCS4A01G323700.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
plastid 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	98.55	98.55
TraesCS5B01G554600.1	Wheat	cytosol, plastid	97.58	87.45
Os03t0854100-01	Rice	cytosol	83.09	83.5
HORVU5Hr1G123590.1	Barley	cytosol	96.62	82.14
EER90493	Sorghum	cytosol	78.99	78.61
Zm00001d034885_P002	Maize	cytosol	78.26	77.88
Zm00001d012827_P002	Maize	cytosol	78.74	77.43
GSMUA_Achr4P28870_001	Banana	cytosol	65.22	66.83
GSMUA_Achr4P21720_001	Banana	cytosol	64.98	66.26
TraesCS1A01G193000.1	Wheat	cytosol	64.01	65.43
GSMUA_Achr11P...	Banana	cytosol	63.53	65.42
VIT_02s0012g01330.t01	Wine grape	cytosol	63.28	64.69
Solyc08g005070.2.1	Tomato	cytosol	62.32	64.18
GSMUA_Achr2P18150_001	Banana	cytosol	61.84	63.37
PGSC0003DMT400002955	Potato	cytosol	61.59	62.81
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	61.11	62.78
KRH75607	Soybean	cytosol	61.11	62.78
Solyc08g076920.2.1	Tomato	nucleus	62.08	62.38
PGSC0003DMT400045159	Potato	cytosol	61.11	61.41
Bra024999.1-P	Field mustard	cytosol	52.17	59.18
CDY58500	Canola	cytosol	56.76	58.6
AT2G35210.1	Thale cress	cytosol	55.56	58.23
AT5G46750.1	Thale cress	cytosol	56.52	58.21
CDX77687	Canola	cytosol	56.52	58.21
CDY44506	Canola	cytosol	55.56	58.08
CDY59045	Canola	cytosol	55.07	58.02
Bra013265.1-P	Field mustard	cytosol	54.83	57.61
Bra017330.1-P	Field mustard	cytosol	54.83	57.61
CDX90439	Canola	cytosol	57.0	57.56
CDX78809	Canola	cytosol	54.11	57.29
CDY01499	Canola	cytosol	55.8	56.76
AT4G17890.1	Thale cress	cytosol	56.52	56.66
Bra012634.1-P	Field mustard	cytosol	56.52	22.87
TraesCS4A01G099400.1	Wheat	mitochondrion	21.26	18.88
TraesCS2A01G203600.1	Wheat	cytosol	17.39	15.16
TraesCS7A01G263800.2	Wheat	cytosol	15.22	7.65
TraesCS5A01G293000.1	Wheat	cytosol	13.77	6.86
TraesCS6A01G221400.1	Wheat	cytosol	10.87	5.9

Protein Annotations

EnsemblPlants:TraesCS4A01G323700.1	EnsemblPlantsGene:TraesCS4A01G323700	Gene3D:3.30.40.160	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150
GO:GO:0030234	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:IPR001164	InterPro:IPR038508
PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	PFAM:PF01412	PFscan:PS50115	PRINTS:PR00405	SEG:seg
SMART:SM00105	SUPFAM:SSF57863	MapMan:22.3.4.2	:	:	:

Description

No Description!

Coordinates

chr4A:+:611579698..611583177

Molecular Weight (calculated)

45006.4 Da

IEP (calculated)

9.366

GRAVY (calculated)

-0.682

Length

414 amino acids

Sequence
(BLAST)

001: MAFDAFTDKT AVFRRLKAKP ENKMCFDCNA KNPTWASVTY GIFLCLDCSA FHRSLGVHIT FVRSTNLDSW TPDQLKMMAF GGNNRAHAFF KQHGWTEGSG
101: KVDSKYTSRA AELYRQILQK EVAKSSTVNV LPSSPVAASQ APNPSDDFPD FKLADAPEET TNGKHEPVVA NPPKEPAQAP KAPTHPTYVS SVKKPLGAKK
201: LGAKTGGLGV KKLTTKSNES LYDQKPEEPK PALPTMTTTT SAAKSGPSSH SRFQYMENEP STESKTGGGN KTGHVAAPKT SDFFHEYGMD NGFQRKTSTA
301: ASKTQIEETD EARKKFSNAK AISSSQYFGN TDREQKEAQL SLQKFSGSSS ISSADLFGRD TNDSDLDASA ADLINRISFQ ASQDLSSLKN MAGETGKKLT
401: SFASNFITDL DRIL

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.