Factsheet for PGSC0003DMT400002955

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005070.2.1	Tomato	cytosol	94.58	95.52
PGSC0003DMT400045159	Potato	cytosol	81.77	80.58
VIT_02s0012g01330.t01	Wine grape	cytosol	73.65	73.83
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	72.17	72.7
KRH75607	Soybean	cytosol	71.92	72.46
GSMUA_Achr11P...	Banana	cytosol	66.5	67.16
AT2G35210.1	Thale cress	cytosol	64.04	65.82
AT5G46750.1	Thale cress	cytosol	65.02	65.67
Bra013265.1-P	Field mustard	cytosol	63.55	65.48
CDX78809	Canola	cytosol	62.81	65.22
CDY44506	Canola	cytosol	63.55	65.15
CDX90439	Canola	cytosol	65.76	65.12
GSMUA_Achr2P18150_001	Banana	cytosol	64.78	65.1
CDY58500	Canola	cytosol	64.29	65.09
GSMUA_Achr4P21720_001	Banana	cytosol	65.02	65.02
Bra024999.1-P	Field mustard	cytosol	58.37	64.93
AT4G17890.1	Thale cress	cytosol	66.01	64.89
CDX77687	Canola	cytosol	64.04	64.68
CDY01499	Canola	cytosol	64.78	64.62
GSMUA_Achr4P28870_001	Banana	cytosol	64.29	64.6
EER90493	Sorghum	cytosol	65.52	63.94
Zm00001d012827_P002	Maize	cytosol	66.26	63.9
EER91883	Sorghum	cytosol	64.04	63.88
Os03t0854100-01	Rice	cytosol	64.53	63.59
Os10t0574800-01	Rice	plasma membrane	63.55	63.39
Zm00001d034885_P002	Maize	cytosol	64.53	62.98
TraesCS1A01G193000.1	Wheat	cytosol	62.32	62.47
CDY59045	Canola	cytosol	60.34	62.34
TraesCS1D01G196700.1	Wheat	cytosol	62.07	62.22
Bra017330.1-P	Field mustard	cytosol	59.85	61.68
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	62.81	61.59
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	62.56	61.35
Zm00001d047020_P002	Maize	cytosol	64.53	59.55
TraesCS5B01G554600.1	Wheat	cytosol, plastid	62.56	54.98
Zm00001d030031_P002	Maize	plastid	64.53	54.24
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	62.32	53.72
HORVU5Hr1G123590.1	Barley	cytosol	61.82	51.54
PGSC0003DMT400076862	Potato	cytosol	8.37	26.36
Bra012634.1-P	Field mustard	cytosol	65.76	26.1
HORVU1Hr1G047800.23	Barley	plastid	20.94	25.15
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	12.07	20.85
PGSC0003DMT400028571	Potato	mitochondrion	21.92	19.39
PGSC0003DMT400008126	Potato	cytosol	9.61	18.22
PGSC0003DMT400023046	Potato	mitochondrion	20.94	18.2
PGSC0003DMT400013119	Potato	cytosol	9.11	17.79
PGSC0003DMT400049649	Potato	cytosol	20.2	17.26
PGSC0003DMT400064425	Potato	cytosol	18.47	15.92
PGSC0003DMT400012918	Potato	cytosol	16.26	14.19
PGSC0003DMT400068809	Potato	plastid	6.4	12.04
PGSC0003DMT400037443	Potato	cytosol	5.42	10.78
PGSC0003DMT400036762	Potato	cytosol	14.78	10.27
PGSC0003DMT400037441	Potato	cytosol	6.4	7.6
PGSC0003DMT400005756	Potato	cytosol	14.78	7.34

Protein Annotations

EntrezGene:102602036	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	UniProt:M0ZKY0	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400001155
PGSC:PGSC0003DMG400001155	EnsemblPlants:PGSC0003DMT400002955	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381
SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI000295023E	RefSeq:XP_006366246.1	SEG:seg	:

Description

Arf gtpase-activating protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001155]

Coordinates

chr8:-:4336268..4342994

Molecular Weight (calculated)

44007.3 Da

IEP (calculated)

9.500

GRAVY (calculated)

-0.600

Length

406 amino acids

Sequence
(BLAST)

001: MAADSFTDKN AVFRKLKAKS ENKMCFDCNA KNPTWASVTY GIFLCIDCSA THRSLGVHIS FVRSTNLDSW SPDQLKMMYF GGNNRAQVFF KQHGWTDGGK
101: IEAKYTSRAA ELYKQLLSKE VAKSKAEESK AQGAGLPASP VASQAVQTTN GFSNIKTSEA PKETSSFKDE TPEVSASPKA SQSVYTTIKK PIVAKKSGKP
201: GGLGARRLTK KTSESLYDQK PEEPPVQVSS SNPASNAPTG GSSFTSRFEY TDNVQPSEMS SGRVLNHVSP PMSSNFFADY GMESGFKKKS SNSSKVQIEE
301: TDEARKKFTN AKAISSAQFF GDQSKAEMEA SVSLKKFSGS SAISSADLFG DDDRSDLDLT AGDLINRISF QAQQDMSSLK NIAGETGKRL GSFASTLMSD
401: FQDRIL

Best Arabidopsis Sequence Match ( AT5G46750.1 )
(BLAST)

001: MATENLTDKN VVFRKLKSKS ENKVCFDCSA KNPTWASVPY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SPEQLRTMMF GGNNRAQVFF KQHGWNDGGK
101: IEAKYTSRAA DMYRQTLAKE VAKAMAEETV LPSLSSVATS QPVESSENGF TSESPKESSL KQEAAVVSSP KASQKVVAST FKKPLVSRKS GKTGGLGARK
201: LTTKSKDNLY EQKPEEPVPV IPAASPTNDT SAAGSSFASR FEYFDDEQSG GQSGTRVLSH VAPPKSSNFF NEFGMDSAFP KKSSSSSSKA QVEETDEARK
301: KFSNAKSISS AQFFGNQNRD ADLDSKATLQ KFSGSAAISS SDLFGHGPDD SNIDITASDL INRISFQAQQ DMSSIANLAE ETKNKLGTFA SSIFSDLQDR
401: ML

Arabidopsis Description

AGD9AGD9 [Source:UniProtKB/TrEMBL;Acc:A0A178UAW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.