CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92945
KRG95576
KRH01512
KRH27831
KRH32056
KRH33850
KRH41321
KRH45201
KRH60047
KRH67258
KRH71381
KRH77654

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	KRG95576	AT3G63300.1	19363154
AT5G13300.1	KRH32056	AT3G63300.1	19363154
AT5G13300.1	KRH67258	AT3G63300.1	19363154
AT5G13300.1	KRH71381	AT3G63300.1	19363154
AT5G13300.1	KRH01512	AT5G13300.1	15743878
AT5G13300.1	KRH45201	AT5G13300.1	15743878
AT5G13300.1	KRG92945	AT5G26980.1	15743878
AT5G13300.1	KRH33850	AT5G26980.1	15743878
AT5G13300.1	KRH27831	AT5G42080.1	15923323
AT5G13300.1	KRH41321	AT5G42080.1	15923323
AT5G13300.1	KRH60047	AT5G42080.1	15923323
AT5G13300.1	KRH77654	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01512	Soybean	cytosol	97.33	95.47
VIT_01s0150g00030.t01	Wine grape	cytosol	86.63	85.7
PGSC0003DMT400005756	Potato	cytosol	80.32	80.91
AT5G13300.1	Thale cress	cytosol	79.47	79.08
CDY09784	Canola	cytosol	76.31	78.7
Bra006193.1-P	Field mustard	cytosol	77.16	78.11
CDX78515	Canola	cytosol	78.74	77.98
CDX69650	Canola	cytosol	77.89	77.6
Bra008838.1-P	Field mustard	cytosol	77.64	77.36
Zm00001d049872_P001	Maize	cytosol	49.82	74.68
Solyc12g042180.1.1	Tomato	cytosol	20.29	74.55
GSMUA_Achr11P...	Banana	cytosol	73.03	73.65
GSMUA_Achr4P00060_001	Banana	cytosol	73.39	72.16
TraesCS5A01G293000.1	Wheat	cytosol	72.3	71.6
TraesCS5B01G292200.1	Wheat	cytosol	72.17	71.22
Os09t0510700-01	Rice	cytosol	72.17	71.05
TraesCS5D01G300300.2	Wheat	cytosol	72.17	70.71
Zm00001d021087_P003	Maize	cytosol	71.57	70.37
EER99172	Sorghum	cytosol	71.45	70.33
HORVU5Hr1G077570.15	Barley	cytosol	71.32	70.13
OQU80812	Sorghum	cytosol	68.04	67.96
TraesCS7A01G263800.2	Wheat	cytosol	67.31	67.31
Zm00001d031667_P006	Maize	cytosol	67.07	67.07
HORVU7Hr1G055220.21	Barley	cytosol	67.19	66.55
Os08t0537600-01	Rice	plasma membrane	66.83	66.19
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	59.3	65.95
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	66.46	64.58
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	66.46	64.58
Solyc12g042170.1.1	Tomato	cytosol	41.19	62.55
KRH63858	Soybean	cytosol	58.32	61.15
KRH59741	Soybean	cytosol	58.81	60.5
Zm00001d009353_P001	Maize	cytosol	8.87	60.33
Zm00001d015981_P001	Maize	peroxisome	10.33	55.56
KRH54108	Soybean	cytosol	48.6	54.2
CDY53619	Canola	cytosol	21.26	51.93
Zm00001d015278_P001	Maize	mitochondrion	20.66	50.6
Zm00001d004245_P003	Maize	cytosol	11.42	48.96
KRH24228	Soybean	cytosol	45.93	48.71
KRH29237	Soybean	cytosol	45.81	48.58
Zm00001d049871_P001	Maize	cytosol	11.18	48.17
Zm00001d023982_P001	Maize	cytosol	15.55	32.9
KRH15700	Soybean	cytosol	7.65	32.47
KRH38902	Soybean	cytosol	8.02	27.16
KRH09434	Soybean	cytosol	7.9	26.64
KRH41906	Soybean	cytosol	8.63	23.75
KRH22157	Soybean	cytosol	10.69	18.3
KRH27179	Soybean	cytosol	10.69	18.18
KRH26038	Soybean	cytosol	10.57	17.4
KRH55419	Soybean	cytosol	10.09	16.09
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	7.53	15.38
KRH75607	Soybean	cytosol	7.53	15.38
KRH19707	Soybean	cytosol	8.14	13.93
KRH32302	Soybean	mitochondrion	7.9	13.57
KRH67539	Soybean	mitochondrion	7.65	12.96
KRG95812	Soybean	endoplasmic reticulum	7.65	12.88
KRH30767	Soybean	nucleus	3.52	11.93
CDY08879	Canola	cytosol	1.94	5.08

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	EntrezGene:100798227	MapMan:22.3.4.1	Gene3D:3.30.40.160	EMBL:ACUP02005009
InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G257600	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	UniProt:I1KWR3
InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267
InterPro:IPR036770	InterPro:IPR038508	EnsemblPlants:KRH45201	ProteinID:KRH45201	ProteinID:KRH45201.1	PFAM:PF00169
PFAM:PF01412	PFAM:PF13637	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003
PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00105
SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729
SUPFAM:SSF57863	UniParc:UPI00023CAB55	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:23143180..23153199

Molecular Weight (calculated)

92103.8 Da

IEP (calculated)

7.465

GRAVY (calculated)

-0.483

Length

823 amino acids

Sequence
(BLAST)

001: MQFAKLDDSP MFRKQIQCME ESAESLRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLNDRLLQF VNIDLQEVKE ARKRFDKASL IYDQTRERFL SLRKGTKTGV ATALEEELHS ARSTFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNER MQEYKRQIDR ESRWASNGSN GSPNGDGIQA IGRSSHKMIE AVMQSAAKGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKSSGSSSQH SGQRNSSELG SGLLSRWLSS HHHGGVHDEK SVAHHTVNLL TSTIKVDADQ SDLRFCFRII
401: SPTKNYTLQA ESALDQMDWI EKITGVIASL LSSQIPERML PASPMGSGHH RSTSESSSFE SSDFDHYAVE ECAADRSFTS AHLERPSRSL QQQRSCTKSE
501: KPIDVLRRVC GNDKCADCGA PEPDWASLNL GVLVCIECSG VHRNLGVHIS KVRSLTLDVK VWEPSVISLF QSLGNTFANS VWEELLQSRS AFQVDLVPTG
601: LSTSDKPMMF FITKPCQSDS LSVKEKFIHA KYAEKLFVRK PKDNQYCLLV AQQIWEAVHA NDKKAVYRYI VNSDVDVNAV YEPTCSSSLT LAKVMLLQEQ
701: TSHDHGSTLA GNTLDWSSTK EGQVMDNLEG CTLLHLACET ADIGMVELLL QYGANVNASD SRGQTPLHRC ILKGRSTFAR LLLSRGADPR AVDEQGRTPI
801: ELAAESNAGG DREVHAPLTD SNG

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.