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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 3
  • plasma membrane 1
  • cytosol 2
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:cytosol
Plant-mPloc:golgi, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 plasma membrane: 28056797
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0681100-01
Os03t0635800-01
Os05t0556100-01
Os06t0116300-01
Os08t0537600-01
Os09t0510700-01
Os12t0604200-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G13300.1 Os03t0635800-01 AT3G63300.1 19363154
AT5G13300.1 Os12t0604200-00 AT3G63300.1 19363154
AT5G13300.1 Os08t0537600-01 AT5G13300.1 15743878
AT5G13300.1 Os09t0510700-01 AT5G13300.1 15743878
AT5G13300.1 Os06t0116300-01 AT5G26980.1 15743878
AT5G13300.1 Os01t0681100-01 AT5G42080.1 15923323
AT5G13300.1 Os05t0556100-01 AT5G42080.1 15923323
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d049872_P001 Maize cytosol 57.52 87.07
OQU80812 Sorghum cytosol 83.63 84.34
Zm00001d031667_P006 Maize cytosol 82.91 83.72
HORVU7Hr1G055220.21 Barley cytosol 81.83 81.83
TraesCS7A01G263800.2 Wheat cytosol 80.87 81.65
Zm00001d009353_P001 Maize cytosol 11.55 79.34
Zm00001d015981_P001 Maize peroxisome 14.56 79.08
TraesCS7B01G161800.1 Wheat endoplasmic reticulum 80.26 78.75
TraesCS7D01G264700.1 Wheat endoplasmic reticulum 80.26 78.75
Os09t0510700-01 Rice cytosol 75.81 75.36
CDX70496 Canola cytosol 48.74 73.24
Solyc12g042180.1.1 Tomato cytosol 19.49 72.32
GSMUA_Achr11P... Banana cytosol 70.88 72.18
Zm00001d004245_P003 Maize cytosol 16.13 69.79
GSMUA_Achr4P00060_001 Banana cytosol 70.16 69.65
Zm00001d049871_P001 Maize cytosol 15.88 69.11
KRH45201 Soybean cytosol 66.19 66.83
CDY09784 Canola cytosol 63.9 66.54
VIT_01s0150g00030.t01 Wine grape cytosol 66.43 66.35
PGSC0003DMT400005756 Potato cytosol 64.86 65.97
Solyc05g023750.2.1 Tomato cytosol 64.5 65.61
AT5G13300.1 Thale cress cytosol 64.86 65.18
CDX69650 Canola cytosol 64.5 64.89
Bra008838.1-P Field mustard cytosol 64.26 64.65
CDX78515 Canola cytosol 64.38 64.38
Bra006193.1-P Field mustard cytosol 62.94 64.33
KRH01512 Soybean cytosol 64.74 64.12
GSMUA_Achr7P22530_001 Banana endoplasmic reticulum 56.2 63.11
Solyc03g118260.1.1 Tomato cytosol 59.21 61.5
AT5G61980.1 Thale cress cytosol 59.69 59.9
CDY00242 Canola cytosol 56.44 59.59
VIT_17s0000g00310.t01 Wine grape cytosol 59.21 59.49
Bra010046.1-P Field mustard cytosol 56.08 58.91
Bra029295.1-P Field mustard cytosol 60.29 58.12
CDY30689 Canola cytosol 60.17 58.0
KRH63858 Soybean cytosol 54.63 57.83
KRH59741 Soybean cytosol 54.63 56.75
PGSC0003DMT400036762 Potato cytosol 39.83 56.68
CDX86943 Canola cytosol 48.13 56.18
Solyc12g042170.1.1 Tomato cytosol 35.62 54.61
Zm00001d015278_P001 Maize mitochondrion 21.78 53.87
KRH54108 Soybean cytosol 46.33 52.17
Os02t0632500-01 Rice cytosol, plasma membrane 43.08 47.11
CDY53619 Canola cytosol 17.81 43.92
Zm00001d023982_P001 Maize cytosol 19.25 41.13
Os07t0563800-02 Rice cytosol 10.71 18.7
Os10t0574800-01 Rice plasma membrane 8.18 16.71
Os03t0854100-01 Rice cytosol 7.46 15.05
Os03t0278400-01 Rice plasma membrane 7.7 14.13
CDY08879 Canola cytosol 2.41 6.35
Protein Annotations
Gene3D:1.20.1270.60Gene3D:1.25.40.20MapMan:22.3.4.1Gene3D:3.30.40.160EntrezGene:4346168InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sfInterPro:ARFGAP/RecOInterPro:Ankyrin_rptInterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfInterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sfProteinID:BAF24280.1InterPro:BAR_domProteinID:BAT06457.1ncoils:CoilGO:GO:0003674
GO:GO:0005096GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0008150GO:GO:0030234GO:GO:0043547GO:GO:0046872InterPro:IPR001164
InterPro:IPR001849InterPro:IPR002110InterPro:IPR004148InterPro:IPR020683InterPro:IPR027267InterPro:IPR036770
InterPro:IPR038508EnsemblPlantsGene:Os08g0537600EnsemblPlants:Os08t0537600-01PFAM:PF00169PFAM:PF01412PFAM:PF12796
PFAM:PF16746InterPro:PH_domainPRINTS:PR00405PFscan:PS50003PFscan:PS50088PFscan:PS50115
PFscan:PS50297PANTHER:PTHR23180PANTHER:PTHR23180:SF242UniProt:Q0J435SMART:SM00105SMART:SM00233
SMART:SM00248SMART:SM00721SUPFAM:SSF103657SUPFAM:SSF48403SUPFAM:SSF50729SUPFAM:SSF57863
UniParc:UPI0000DD95C9RefSeq:XP_015648272.1SEG:seg:::
Description
Arf GTPase activating protein family protein. (Os08t0537600-01)
Coordinates
chr8:-:26871277..26879986
Molecular Weight (calculated)
93541.5 Da
IEP (calculated)
7.065
GRAVY (calculated)
-0.510
Length
831 amino acids
Sequence
(BLAST)
001: MLFAKLDDSP MLRTQIQSLE ESAEILRERC LKFHKGCRKY TEGLGEAYDG DIAFASSLET FGGGHNDPIS VAFGGPVMTK FTIALRELGT YKEVLRSQVE
101: HMLNDRLLNF VDIDLHDVKD ARKRFDKASL LYDQVRDKYL SLKKGTRADI TTAIEDELHN ARSSFEQARF NLVTSISHIE AKKRFEFLEA VSSTMDSHLR
201: YFKQGYDLLH QMEPYINQVL AYAQQSRERA NKEQASLVER MHEYKKQIDR EIRLSNGLTD AHNGDGIQTI ARSSHKMIEA VMQSASKGKV QTIRQGYLSK
301: RSSNLRADWK RRFFVLDSRG MLYYYRKQIN RTPGGCSSHP RSIGNPTEHG SGLLSRLFSS HYHGIIHDEK SVARHTVNLL TSTIKVDAEQ SDLRFCFRII
401: SPTKVYTLQA ESAIDQMDWI EKITGVIASL LSSQSPEQCF LLSPKSCGHD GSASESSSFT SQDLEPSMYD DLTLEKNTGN GQHDVRGTHY HKTNMKPEKP
501: IDLLRKVDGN IICVDCGSME PDWASLNLGA LLCIECSGVH RNLGVHISKV RSLTLDVRVW EPSVINLFQS LGNKFVNDVW EEVLPSSKNG ESDDKLRAHG
601: LDTAWHFTVS KPKHSDPFSA KEKFIHAKYA DKEFVRKYSM DEIQLAQQMW DNVTANDKRA VYSLIVQSRA NVNLVYGEMS YSSRSTTGRS SQQEHSSSPS
701: DGSPVFFDCH SHEKVSPREP LSPASTSSRV DDGEERCEGF SLLHLACHVA DVGMVELLLQ YGANVNAIDS RGRTPLHQCI LKGRHIHAKL LLSRGANPQV
801: ADQDGRTALQ CAIDGGTSDD EILVLLEDYT R
Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)
001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC
Arabidopsis Description
AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.