Factsheet for Bra029295.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30689	Canola	cytosol	97.68	97.68
AT5G61980.1	Thale cress	cytosol	90.84	94.57
Bra010046.1-P	Field mustard	cytosol	83.06	90.52
Zm00001d049872_P001	Maize	cytosol	43.62	68.49
GSMUA_Achr11P...	Banana	cytosol	61.25	64.71
Bra008838.1-P	Field mustard	cytosol	61.6	64.29
Bra006193.1-P	Field mustard	cytosol	60.32	63.96
VIT_17s0000g00310.t01	Wine grape	cytosol	60.79	63.36
GSMUA_Achr4P00060_001	Banana	cytosol	60.56	62.37
TraesCS5A01G293000.1	Wheat	cytosol	59.63	61.85
TraesCS5B01G292200.1	Wheat	cytosol	59.63	61.63
Os09t0510700-01	Rice	cytosol	59.63	61.48
EER99172	Sorghum	cytosol	59.51	61.36
TraesCS5D01G300300.2	Wheat	cytosol	59.63	61.19
TraesCS7A01G263800.2	Wheat	cytosol	58.35	61.12
Zm00001d021087_P003	Maize	cytosol	59.28	61.05
HORVU7Hr1G055220.21	Barley	cytosol	58.58	60.77
HORVU5Hr1G077570.15	Barley	cytosol	58.7	60.45
OQU80812	Sorghum	cytosol	57.77	60.44
Zm00001d031667_P006	Maize	cytosol	57.66	60.39
Os08t0537600-01	Rice	plasma membrane	58.12	60.29
Solyc03g118260.1.1	Tomato	cytosol	55.68	60.0
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	57.66	58.68
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	57.66	58.68
Zm00001d009353_P001	Maize	cytosol	8.24	58.68
PGSC0003DMT400036762	Potato	cytosol	38.05	56.16
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	48.14	56.08
Zm00001d015981_P001	Maize	peroxisome	9.63	54.25
Zm00001d004245_P003	Maize	cytosol	10.67	47.92
Zm00001d015278_P001	Maize	mitochondrion	18.45	47.32
Bra019896.1-P	Field mustard	cytosol	38.28	42.86
Bra027124.1-P	Field mustard	cytosol	36.43	41.26
Zm00001d049871_P001	Maize	cytosol	9.05	40.84
Zm00001d023982_P001	Maize	cytosol	14.73	32.65
Bra021263.1-P	Field mustard	cytosol	7.66	24.09
Bra002995.1-P	Field mustard	cytosol	10.09	18.35
Bra029030.1-P	Field mustard	cytosol	9.98	17.99
Bra022711.1-P	Field mustard	cytosol	9.63	17.58
Bra024999.1-P	Field mustard	cytosol	6.84	16.16
Bra013265.1-P	Field mustard	cytosol	7.08	15.48
Bra017179.1-P	Field mustard	cytosol	7.66	14.97
Bra039812.1-P	Field mustard	cytosol	7.54	14.41
Bra017330.1-P	Field mustard	cytosol	6.38	13.96
Bra007020.1-P	Field mustard	cytosol	7.31	13.88
Bra000005.1-P	Field mustard	mitochondrion	7.54	13.63
Bra005187.1-P	Field mustard	cytosol	6.96	13.61
Bra026910.1-P	Field mustard	plastid	1.62	7.73
Bra012634.1-P	Field mustard	cytosol	6.84	5.77

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:BAR_dom	EnsemblPlantsGene:Bra029295	EnsemblPlants:Bra029295.1	EnsemblPlants:Bra029295.1-P	ncoils:Coil	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164
InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770
InterPro:IPR038508	UniProt:M4EKH8	PFAM:PF00169	PFAM:PF01412	PFAM:PF13637	PFAM:PF16746
InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297
PANTHER:PTHR23180	PANTHER:PTHR23180:SF373	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721
SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0002545BA5	SEG:seg

Description

AT5G61980 (E=0.0) AGD1 | AGD1 (ARF-GAP domain 1); ARF GTPase activator/ protein binding / zinc ion binding

Coordinates

chrA02:+:26051155..26056574

Molecular Weight (calculated)

97835.1 Da

IEP (calculated)

8.359

GRAVY (calculated)

-0.506

Length

862 amino acids

Sequence
(BLAST)

001: MHFAKLDDSP MFRQQMQSME ESAELLRMRC LRFYKGCRKY TEGLGEGYDS DIGFANALES FGGGHNDPLC VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLNDRLLQF VNVDVQEVKE ARKRFDKASI IYDQAREKYL SLRKSTRLDV AATIEEDLHS ARTTFEQARF HLVSALSNAE AKKRFEFLEA VSGTMDAHLR
201: FFKQASYFSL RVRLVRFSLS SVQHKSYRIN PKYSSVQYSG YELLHQMEPF INQVLAYAHQ SKECANYEMA SLNEKMQEYQ RQVDRETRNS CGSPTGDGMR
301: HNSRNSQKVI EAVMQSAAKG KVQTIRQGYL SKRSSNLRGD WKRRFFILDS RGMLYYYRKP WNWSSNGSRS VVHRNMTSEN SPGLLSRWLS SHYHGGVHDE
401: KPVARHTVNL LTSTIKVDAD QTDLRFCFRI ISPTKVYTLQ AENAQDQMDW IEKITGVIAS LLSFQTPERA IMHLSTVDGD TFSASDSGSL ADPYDFEQAE
501: GRDSIVENPM TGGNRSRFSG CLQQHDMMKT EKPIDVLTRV LGNEKCADCG APEPDWASLN LGVLICIECS GIHRNLGVHI SKVRSLTLDV KVWEPSVLTL
601: FQSLGNVYVN SVWEELLNSE SRSSSASRSS GTPKADRPRK FLVRKPGFSD PISVKELFIH AKYSERIFVR KATDSQHFQA VFQEIWENVR ANDKKSVYKH
701: IVCSEADVNA LRGQASYTVS LPLSKMMQLD AKEETLEAKF KSIDKEFQEK PEGTSRRDSE SMVREETSNE CSLLHLACLS ADIGMVELLL QYGAKVNATD
801: SKGRTPLHHC IISRRYAIAR LLLMRGGDPN AVDKDSNTPV KYASETDLND SELIALLTDS KR

Best Arabidopsis Sequence Match ( AT5G61980.1 )
(BLAST)

001: MHFAKLDDSP MFRQQMQSME ESAELLRLRC LRFYKGCRKY TEGLGEGYDA DIGFVNALES FGGGHNDPVC VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLSDRLLQF VNGDVHEVKE ARKRFDKATI TYDQAREKYL SLRKSTRLDV AATIEEDLHS ARTTFEQARF HLVSALSNAE SKKRFEFLEA VSGTMDAHLR
201: FFKQGYELLH QMEPFINQVL AYAHQSRECA NYEMASLNER MQEYQRQVDR ETRNSCVSPT GDGMRHNSRN SQKVIEAVMQ SAAKGKVQTI RQGYLSKRSS
301: NLRGDWKRRF FILDSRGMLY YYRKPWNWSS GNGSRSVVHR NMASENSPGL LSRWLSSHYH GGVHDEKPVA RHTVNLLTST IKVDADQTDL RFCFRIISPT
401: KVYTLQAENA QDQMDWIEKI TGVIASLLSF QTPERAIMRL STVDGGDTFS ASDSGSLADP YDIEQAESGE STVEHPMTGG NRSRFSGCLQ QHDMVKTEKP
501: IDVLTRVLGN ERCADCGAPE PDWASLNLGV LICIECSGIH RNLGVHISKV RSLTLDVKVW EPSVLTLFQS LGNVYVNSVW EELLNSESRT SSASRSSGTP
601: KSDRPRKLLV RKPGFNDPIS VKELFIHAKY SERIFVRKAI DSQHFQAVFQ EIWENVRAND KKSVYRHIVC SEADVNALRG QASYTVSLPL SKMMQMEETL
701: EAKFKSIEEE FQENPAGYSN SRGDGESMVR EETSNDCSLL HLACLSADIG MVELLLQYGA KINATDSKGR TPLHHCIISR RYAIARLLLM RGGDPNAVDK
801: DSNIPVKYAS QTDLNDSELI ALLTDSKR

Arabidopsis Description

AGD1ADP-ribosylation factor GTPase-activating protein AGD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.