Factsheet for VIT_01s0150g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0150g00030.t01
VIT_07s0151g00290.t01
VIT_14s0060g01540.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	VIT_07s0151g00290.t01	AT3G63300.1	19363154
AT5G13300.1	VIT_01s0150g00030.t01	AT5G13300.1	15743878
AT5G13300.1	VIT_14s0060g01540.t01	AT5G26980.1	15743878

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45201	Soybean	cytosol	85.7	86.63
PGSC0003DMT400005756	Potato	cytosol	82.33	83.84
KRH01512	Soybean	cytosol	84.25	83.55
CDY09784	Canola	cytosol	76.8	80.08
Bra006193.1-P	Field mustard	cytosol	77.64	79.46
AT5G13300.1	Thale cress	cytosol	78.97	79.44
CDX78515	Canola	cytosol	78.97	79.06
CDX69650	Canola	cytosol	78.12	78.69
Bra008838.1-P	Field mustard	cytosol	77.88	78.45
Zm00001d049872_P001	Maize	cytosol	49.64	75.23
GSMUA_Achr11P...	Banana	cytosol	72.84	74.26
Solyc12g042180.1.1	Tomato	cytosol	19.83	73.66
GSMUA_Achr4P00060_001	Banana	cytosol	73.44	73.0
TraesCS5A01G293000.1	Wheat	cytosol	71.15	71.24
TraesCS5B01G292200.1	Wheat	cytosol	71.27	71.1
Os09t0510700-01	Rice	cytosol	71.03	70.69
TraesCS5D01G300300.2	Wheat	cytosol	71.15	70.48
EER99172	Sorghum	cytosol	70.31	69.98
Zm00001d021087_P003	Maize	cytosol	70.19	69.77
HORVU5Hr1G077570.15	Barley	cytosol	70.07	69.65
VIT_17s0000g00310.t01	Wine grape	cytosol	68.51	68.92
OQU80812	Sorghum	cytosol	67.55	68.2
TraesCS7A01G263800.2	Wheat	cytosol	67.19	67.92
Zm00001d031667_P006	Maize	cytosol	66.59	67.31
HORVU7Hr1G055220.21	Barley	cytosol	67.19	67.27
Os08t0537600-01	Rice	plasma membrane	66.35	66.43
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	58.17	65.41
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	66.47	65.29
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	66.47	65.29
Solyc12g042170.1.1	Tomato	cytosol	41.23	63.28
Zm00001d009353_P001	Maize	cytosol	8.89	61.16
Zm00001d015981_P001	Maize	peroxisome	10.58	57.52
CDY53619	Canola	cytosol	23.08	56.97
Zm00001d015278_P001	Maize	mitochondrion	20.91	51.79
Zm00001d004245_P003	Maize	cytosol	11.66	50.52
Zm00001d049871_P001	Maize	cytosol	10.94	47.64
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	36.78	42.74
Zm00001d023982_P001	Maize	cytosol	15.5	33.16
VIT_17s0053g00430.t01	Wine grape	cytosol	7.81	25.19
VIT_19s0014g03510.t01	Wine grape	cytosol	9.98	17.36
VIT_02s0012g01330.t01	Wine grape	cytosol	8.05	16.54
VIT_00s0404g00040.t01	Wine grape	cytosol	9.13	14.99
VIT_08s0007g00010.t01	Wine grape	mitochondrion	7.81	13.98
VIT_00s0250g00050.t01	Wine grape	plastid	7.09	13.75
CDY08879	Canola	cytosol	2.16	5.71

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	EntrezGene:100259206	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	ProteinID:CBI29251	ProteinID:CBI29251.3	ncoils:Coil	UniProt:D7TFH8
EMBL:FN595770	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683
InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	PFAM:PF00169	PFAM:PF01412	PFAM:PF13637
PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115
PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00105	SMART:SM00233	SMART:SM00248
SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI00015CD087
ArrayExpress:VIT_01s0150g00030	EnsemblPlantsGene:VIT_01s0150g00030	EnsemblPlants:VIT_01s0150g00030.t01	RefSeq:XP_010657242.1	RefSeq:XP_010657245.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:22419955..22442108

Molecular Weight (calculated)

93392.3 Da

IEP (calculated)

7.602

GRAVY (calculated)

-0.502

Length

832 amino acids

Sequence
(BLAST)

001: MHFAKLDDSP MFRKQIQCLE ESAESLRERS LKFYKGCRKY TEGLGEGYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLNDRLIQF VNIDLHDVKE ARKRFDKASL LYDQAREKYL SLRKGTKSDI ATVLEEELHN ARSTFEQARF NLVTTLSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS KYEQAALNEK MQEFKRQIDR ESRWPSNGSN GSPNGDGIQA IGRSSHKMIE AVMQSAAKGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQN SKPSGSGSQH SGQRNSSELG SGLLSRWLSS HYHGGVHDEK SVAHHTVNLL TSTIKVDADQ SDLRFCFRII
401: SPTKNYTLQA ESALDQMDWI EKITGVIASL LSSQAPERCL PISPMGSSHH RSASESSSYE STDFDHTAVE EYTSERSSAT AHHERPSKGL QQIRSCIKSE
501: KPIDVLRRVC GNDKCADCGA PEPDWASLNL GVLVCIECSG VHRNLGVHIS KVRSLTLDVK VWEPSVLTLF QSLGNTFANS VWEELLQSRN AFQVDLVPTG
601: LYKSDKPQLH FISKPSHADS ISIKEKYIHA KYAEKLFVRK PKDNQYPCLV TQQIWDAVRT NDKKAVYRYI VNSEADVNVV YEQTLCNSSL TLAKVMLLQE
701: QTNLDHSSRC LTGDSFDKSS VSSSNAASTS EGQTMEDFDG WSLLHLACET ADIGMLELLL QYGANINACD SRGQMPLHRC ILRGKATFAK LLLTRGADPR
801: AVNGEGKTPF ELAVESNFVD SDVLALLSDS NG

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.