Factsheet for Solyc12g042180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049872_P001	Maize	cytosol	61.61	25.14
Zm00001d015278_P001	Maize	mitochondrion	34.38	22.92
Solyc03g118260.1.1	Tomato	cytosol	77.23	21.62
KRH45201	Soybean	cytosol	74.55	20.29
Solyc05g023750.2.1	Tomato	cytosol	73.66	20.2
TraesCS7A01G263800.2	Wheat	cytosol	74.11	20.17
HORVU7Hr1G055220.21	Barley	cytosol	74.11	19.98
GSMUA_Achr11P...	Banana	cytosol	72.77	19.98
VIT_01s0150g00030.t01	Wine grape	cytosol	73.66	19.83
Zm00001d031667_P006	Maize	cytosol	72.77	19.81
OQU80812	Sorghum	cytosol	72.77	19.78
Os08t0537600-01	Rice	plasma membrane	72.32	19.49
Zm00001d021087_P003	Maize	cytosol	72.77	19.47
EER99172	Sorghum	cytosol	72.32	19.38
Os09t0510700-01	Rice	cytosol	71.88	19.26
TraesCS5A01G293000.1	Wheat	cytosol	71.43	19.25
GSMUA_Achr4P00060_001	Banana	cytosol	71.88	19.24
TraesCS5B01G292200.1	Wheat	cytosol	71.43	19.18
TraesCS5D01G300300.2	Wheat	cytosol	71.43	19.05
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	71.43	18.89
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	71.43	18.89
KRH01512	Soybean	cytosol	70.54	18.83
HORVU5Hr1G077570.15	Barley	cytosol	67.41	18.04
Solyc04g008660.2.1	Tomato	cytosol	55.8	16.01
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	30.36	9.19
Zm00001d023982_P001	Maize	cytosol	9.38	5.4
CDY53619	Canola	cytosol	4.02	2.67
Solyc03g098500.2.1	Tomato	nucleus	1.79	1.61
Solyc07g063550.2.1	Tomato	cytosol	2.23	1.05
Zm00001d049871_P001	Maize	cytosol	0.89	1.05
Solyc10g006850.2.1	Tomato	cytosol	2.23	1.0
Solyc03g006610.2.1	Tomato	cytosol	1.79	0.86
Zm00001d009353_P001	Maize	cytosol	0.45	0.83
Solyc08g005070.2.1	Tomato	cytosol	1.34	0.75
Zm00001d015981_P001	Maize	peroxisome	0.45	0.65
Zm00001d004245_P003	Maize	cytosol	0.45	0.52
Solyc08g076920.2.1	Tomato	nucleus	0.89	0.49
Solyc12g042170.1.1	Tomato	cytosol	0.89	0.37
Solyc10g084690.1.1	Tomato	mitochondrion	0.45	0.22
Solyc09g010520.2.1	Tomato	nucleus	0.45	0.21
CDY08879	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.3.4.1	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf	InterPro:BAR_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	InterPro:IPR004148	InterPro:IPR027267	UniProt:K4DF12	PFAM:PF16746	PANTHER:PTHR23180
PANTHER:PTHR23180:SF374	SMART:SM00721	SUPFAM:SSF103657	EnsemblPlantsGene:Solyc12g042180.1	EnsemblPlants:Solyc12g042180.1.1	UniParc:UPI000276A99C

Description

No Description!

Coordinates

chr12:+:40655980..40662164

Molecular Weight (calculated)

25798.8 Da

IEP (calculated)

5.912

GRAVY (calculated)

-0.417

Length

224 amino acids

Sequence
(BLAST)

001: MQGGMMFARL DDSPMFRQQI QAFEEDAETL RDKCLKFYKG CRKYTEGLGE AYDKNIAFAS SLETFGGGHN DPVAVSFGGP DMVQFAIALR EIGTYKEVLR
101: SQVEQILNDR LLHMASIDHQ VQEARKRFDK ADVAYDQVRE KFLSLKKNTK LDIVVAIEEE LHYARSTFEH TRFNLVGALS SIEAKKKYEF LESVSLTMDA
201: HLQYFKQGYE LLHQMEPYIN QVTL

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.