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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 18260611
plasma membrane: 19502382
nucleus: 19621931
plastid: 21433289
nucleus: 26035336
plasma membrane: 27800704
plasma membrane: 28056797
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0681100-01
Os02t0738900-01
Os03t0736500-01
Os05t0556100-01
Os06t0247800-01
Os08t0425100-01
Os08t0537600-01
Os09t0510700-01
Os10t0362300-03
Os12t0192300-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G42080.1 Os03t0736500-01 AT1G08560.1 19959995
AT5G42080.1 Os12t0192300-00 AT1G08560.1 19959995
AT5G42080.1 Os02t0738900-01 AT1G59610.1 20231465
AT5G42080.1 Os06t0247800-01 AT1G59610.1 20231465
AT5G42080.1 Os08t0425100-01 AT1G59610.1 20231465
AT5G42080.1 Os08t0537600-01 AT5G13300.1 15923323
AT5G42080.1 Os09t0510700-01 AT5G13300.1 15923323
AT5G42080.1 Os10t0362300-03 AT5G35750.1 18642946
AT5G42080.1 Os01t0681100-01 AT5G42080.1 19144001
AT5G42080.1 Os05t0556100-01 AT5G42080.1 19144001
AT5G42080.1 Os01t0681100-01 AT5G42080.1 20231465
AT5G42080.1 Os05t0556100-01 AT5G42080.1 20231465
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G411700.3 Wheat cytosol 95.24 95.24
TraesCS1D01G393000.2 Wheat cytosol 94.91 94.91
TraesCS1A01G385400.2 Wheat cytosol, golgi, nucleus, unclear 94.91 94.91
EES19921 Sorghum cytosol 94.75 94.75
GSMUA_Achr8P27540_001 Banana cytosol 89.98 89.98
VIT_02s0025g01570.t01 Wine grape cytosol, extracellular 88.83 88.83
GSMUA_Achr6P26600_001 Banana cytosol 88.34 88.34
Zm00001d009504_P002 Maize cytosol 94.58 87.8
Solyc05g050600.2.1 Tomato nucleus, plastid 87.36 87.36
Os01t0681100-01 Rice cytosol, plasma membrane 26.27 86.96
KRH60047 Soybean endoplasmic reticulum 86.86 86.72
KRH41321 Soybean endoplasmic reticulum, nucleus 86.54 86.39
Zm00001d038955_P001 Maize cytosol, mitochondrion, plasma membrane 94.25 85.67
HORVU1Hr1G084970.2 Barley plasma membrane 95.07 85.65
KRH77654 Soybean endoplasmic reticulum 85.55 85.41
Solyc01g095970.2.1 Tomato plastid 85.39 85.25
PGSC0003DMT400000646 Potato cytosol 85.39 85.25
KRH27831 Soybean cytosol, endoplasmic reticulum, nucleus 85.06 84.92
CDX67529 Canola cytosol 84.89 84.75
CDY13364 Canola cytosol 84.73 84.59
Bra028525.1-P Field mustard cytosol 84.73 84.59
CDY27661 Canola cytosol 84.4 84.26
AT5G42080.1 Thale cress cytosol 84.4 84.26
Bra025448.1-P Field mustard cytosol 80.46 84.05
CDX99702 Canola cytosol 83.91 83.77
AT3G61760.1 Thale cress cytosol 83.58 83.44
CDX67862 Canola cytosol 83.58 83.44
CDY25074 Canola cytosol 83.58 83.44
Bra003469.1-P Field mustard cytosol 78.65 83.3
KRH47905 Soybean cytosol, endoplasmic reticulum 83.25 83.25
KRH06461 Soybean cytosol 66.5 78.03
Os10t0567800-01 Rice plasma membrane 69.46 68.45
Os03t0713100-01 Rice plasma membrane 67.98 67.76
Os09t0572900-01 Rice cytosol, plasma membrane 67.65 65.81
Os01t0920400-01 Rice nucleus, plastid 36.95 27.51
Os04t0381000-01 Rice cytosol 34.98 26.23
Os03t0260000-01 Rice cytosol 26.44 23.75
Os04t0129900-01 Rice cytosol 25.62 22.81
Os08t0425100-01 Rice plasma membrane 25.78 20.5
Os06t0247800-01 Rice plasma membrane 27.09 18.11
Os02t0738900-01 Rice plasma membrane 27.42 18.09
Os12t0178700-01 Rice cytosol 16.42 17.89
Os01t0748000-00 Rice plastid 21.67 16.06
Protein Annotations
Gene3D:1.20.120.1240MapMan:22.1.7.1Gene3D:3.40.50.300EntrezGene:4339566ProteinID:BAF18192.1ProteinID:BAS95265.1
InterPro:Dynamin_GTPaseInterPro:Dynamin_GTPase_CSInterPro:Dynamin_SFInterPro:Dynamin_centralInterPro:GEDInterPro:GED_dom
GO:GO:0000166GO:GO:0000266GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005515GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0008017GO:GO:0008150GO:GO:0009987GO:GO:0016043GO:GO:0016787InterPro:G_DYNAMIN_dom
InterPro:IPR020850InterPro:IPR030381EnsemblPlantsGene:Os05g0556100EnsemblPlants:Os05t0556100-01InterPro:P-loop_NTPasePFAM:PF00350
PFAM:PF01031PFAM:PF02212PRINTS:PR00195ScanProsite:PS00410PFscan:PS51388PFscan:PS51718
PANTHER:PTHR11566PANTHER:PTHR11566:SF138UniProt:Q0DG31SMART:SM00053SMART:SM00302SUPFAM:SSF52540
UniParc:UPI0000E125DARefSeq:XP_015639359.1SEG:seg:::
Description
dynamin-related protein 1ASimilar to SDL5A. (Os05t0556100-01)
Coordinates
chr5:-:27648092..27653659
Molecular Weight (calculated)
68687.8 Da
IEP (calculated)
7.878
GRAVY (calculated)
-0.334
Length
609 amino acids
Sequence
(BLAST)
001: MENLISLVNK LQRACTALGD HGEESALPTL WDSLPAIAVV GGQSSGKSSV LESVVGKDFL PRGSGIVTRR PLVLQLHRID GDREYAEFMH LPRKRFTDFA
101: LVRKEIADET DRETGRSKQI SSVPIHLSIY SPNVVNLTLI DLPGLTKVAV EGQPDSIVQD IENMVRSFIE KPNCIILAVS PANQDLATSD AIKISREVDP
201: KGERTFGVLT KIDLMDKGTD AVDILEGRSY RLQQQWIGVV NRSQQDINKN VDMIAARRRE REYFSTTPEY KHLAHRMGSE HLAKSLSKHL ETVIKSRIPG
301: LQSLITKTIA ELETELNRLG KPIATDAGGK LYTIMEICRM FDGIYKEHLD GVRPGGEKIY HVFDNQFPVA IKRLQFDKQL AMENVKKLIT EADGYQPHLI
401: APEQGYRRLI ESCLVSIRGP AEAAVDAVHA ILKELVHKAI NETHELKQFP TLRVEVGNAA FESLDRMRDE SKKNTLKLVD MECSYLTVDF FRKLPQDVEK
501: GGNPSHSIFD RYNDSYLRRI GTTVLAYINM VCSTLRNSIP KSIVYCQVRE AKRSLLDHFF TELGAREIKQ LSKLLDEDPA VMERRTNLAK RLELYRSAQA
601: EIDAVAWSK
Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)
001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK
Arabidopsis Description
DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.