CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55419	Soybean	cytosol	81.8	79.26
KRH22157	Soybean	cytosol	75.2	78.17
KRH30767	Soybean	nucleus	37.0	76.13
KRH27179	Soybean	cytosol	73.0	75.41
VIT_19s0014g03510.t01	Wine grape	cytosol	63.6	66.53
Solyc07g063550.2.1	Tomato	cytosol	60.0	63.16
PGSC0003DMT400049649	Potato	cytosol	59.0	62.11
Bra002995.1-P	Field mustard	cytosol	56.8	59.92
CDY63834	Canola	cytosol	56.6	59.7
CDY52243	Canola	cytosol	56.0	59.45
Bra022711.1-P	Field mustard	cytosol	55.8	59.11
AT5G54310.1	Thale cress	cytosol	56.6	58.59
CDY43044	Canola	cytosol	55.8	58.37
Bra029030.1-P	Field mustard	cytosol	55.2	57.74
CDY43831	Canola	cytosol	55.4	57.47
PGSC0003DMT400064425	Potato	cytosol	53.2	56.48
Solyc10g006850.2.1	Tomato	cytosol	54.2	54.2
CDY28774	Canola	endoplasmic reticulum, plasma membrane	53.4	54.16
CDY64205	Canola	endoplasmic reticulum	53.4	54.16
KRH15700	Soybean	cytosol	20.2	52.06
KRH38902	Soybean	cytosol	22.2	45.68
KRH09434	Soybean	cytosol	22.0	45.08
KRH41906	Soybean	cytosol	24.2	40.47
Zm00001d016547_P001	Maize	cytosol, plastid	30.2	28.38
Zm00001d046873_P001	Maize	cytosol, plastid	30.2	28.38
Zm00001d051030_P001	Maize	cytosol, plastid	30.2	28.38
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	17.4	21.59
KRH75607	Soybean	cytosol	17.2	21.34
KRH32302	Soybean	mitochondrion	17.6	18.37
KRG95812	Soybean	endoplasmic reticulum	17.8	18.2
KRH67539	Soybean	mitochondrion	17.6	18.11
KRH19707	Soybean	cytosol	17.0	17.67
KRH63858	Soybean	cytosol	17.4	11.08
KRH45201	Soybean	cytosol	17.4	10.57
KRH59741	Soybean	cytosol	16.6	10.38
KRH01512	Soybean	cytosol	17.4	10.37
KRH54108	Soybean	cytosol	15.2	10.3
KRH29237	Soybean	cytosol	15.6	10.05
KRH24228	Soybean	cytosol	15.4	9.92

Protein Annotations

EntrezGene:100807561	MapMan:22.3.4.2	Gene3D:3.30.40.160	EMBL:ACUP02007440	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	EMBL:BT093762	UniProt:C6T8G3	EnsemblPlantsGene:GLYMA_12G147400	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164
InterPro:IPR038508	EnsemblPlants:KRH26038	ProteinID:KRH26038	ProteinID:KRH26038.1	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0001B1609B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:20542153..20548212

Molecular Weight (calculated)

54055.3 Da

IEP (calculated)

6.745

GRAVY (calculated)

-0.631

Length

500 amino acids

Sequence
(BLAST)

001: MNEKANVSKE LNAKHKKILE GLLKLPENKE CADCKAKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGNE KANSYWEAEL
101: PPHYDRVGIE NFIRAKYEEK RWVARNEKPK SPSSFREEKS PSHWQKPVER GGHDYAAVSE NTFEERKKIQ PSHAIPATRI SVPAPPKGPE LVTTVAKPQH
201: VEKVEPVAPS PQAETSKQTT DTTQNSPSKV DYATDLFDML SMDDPNEKGS GAADATADDN NWAGFQSAAE ASTAEKTDAT KAVESTPQST SGIEDLFKDS
301: PSVTPSLTTE KPQKDVKNDI MSLFEKSNVV SPFAMHQQQL AMLAQQQSLL MAAAKSAGGD PKYLASLQQQ QSLLMAAAAA KSDGGDSKYP TAIQQPGSNI
401: PVQSWPAASF PMPGAMPMGG LEELQKLMQT MNMNAAHSAG SSFQYPPSSY YAMGQVAPTN GTAPTGASKP QSASPVSSTT SKTGNDYDFS SLTQGMFAKH

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.