Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37970 | Sorghum | cytosol | 92.58 | 92.78 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 88.77 | 89.34 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 83.9 | 86.27 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 84.32 | 85.78 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 84.11 | 85.75 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 84.11 | 85.56 |
| Os03t0635800-01 | Rice | nucleus | 65.68 | 82.01 |
| Zm00001d030661_P001 | Maize | cytosol | 71.61 | 73.16 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 68.43 | 71.15 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 66.53 | 70.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 67.8 | 70.48 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 52.97 | 68.12 |
| Os12t0604200-00 | Rice | nucleus | 53.18 | 67.66 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 64.19 | 65.73 |
| KRH67258 | Soybean | nucleus | 51.48 | 63.61 |
| KRG91356 | Soybean | cytosol | 63.77 | 63.24 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 12.92 | 62.89 |
| KRH35470 | Soybean | nucleus | 63.14 | 62.6 |
| PGSC0003DMT400016521 | Potato | nucleus | 60.81 | 61.59 |
| Solyc09g082580.2.1 | Tomato | cytosol | 60.59 | 61.51 |
| KRH69115 | Soybean | nucleus | 63.14 | 61.32 |
| KRH31661 | Soybean | nucleus | 62.29 | 60.87 |
| Bra036892.1-P | Field mustard | nucleus | 59.53 | 60.04 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 58.69 | 59.57 |
| CDY36869 | Canola | nucleus, plastid | 21.82 | 59.2 |
| Bra039719.1-P | Field mustard | nucleus | 58.26 | 59.14 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 53.18 | 59.06 |
| CDY16256 | Canola | cytosol | 50.0 | 59.0 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 59.32 | 58.95 |
| CDY29764 | Canola | nucleus | 55.08 | 58.69 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 58.9 | 58.16 |
| CDX94730 | Canola | cytosol | 54.87 | 57.68 |
| AT3G22810.1 | Thale cress | cytosol | 57.63 | 57.63 |
| CDY22328 | Canola | plastid | 54.87 | 57.43 |
| CDY14898 | Canola | cytosol | 54.24 | 56.76 |
| AT5G43870.1 | Thale cress | plastid | 54.45 | 56.73 |
| KRG95576 | Soybean | nucleus | 58.26 | 56.7 |
| KRH32056 | Soybean | nucleus | 57.63 | 56.55 |
| Bra036001.1-P | Field mustard | nucleus | 54.03 | 56.54 |
| KRH71381 | Soybean | nucleus | 56.57 | 55.51 |
| PGSC0003DMT400049811 | Potato | plastid | 56.78 | 55.49 |
| Solyc09g065590.2.1 | Tomato | plastid | 56.99 | 55.24 |
| Bra023803.1-P | Field mustard | cytosol | 53.81 | 55.22 |
| Bra040444.1-P | Field mustard | plastid | 55.72 | 54.12 |
| CDX93914 | Canola | nucleus | 56.14 | 53.97 |
| CDY53717 | Canola | nucleus | 55.93 | 53.77 |
| AT3G63300.1 | Thale cress | plastid | 56.57 | 53.61 |
| CDY46598 | Canola | mitochondrion | 54.24 | 53.0 |
| CDX96925 | Canola | plastid | 54.24 | 52.24 |
| CDY36868 | Canola | nucleus | 25.0 | 51.3 |
| Zm00001d039295_P001 | Maize | cytosol | 33.47 | 38.44 |
| Zm00001d000175_P001 | Maize | plastid | 30.3 | 36.02 |
| Zm00001d029886_P001 | Maize | vacuole | 29.03 | 34.6 |
| Zm00001d051361_P001 | Maize | plastid | 30.3 | 33.33 |
| Zm00001d003160_P001 | Maize | cytosol | 24.15 | 28.22 |
| Zm00001d025771_P001 | Maize | cytosol | 22.46 | 24.82 |
Protein Annotations
| EnsemblPlants:Zm00001d033283_P001 | EnsemblPlants:Zm00001d033283_T001 | EnsemblPlantsGene:Zm00001d033283 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 |
| PANTHER:PTHR31351:SF4 | PFAM:PF05703 | PFAM:PF08458 | ProteinID:ONM07139.1 | SEG:seg | UniParc:UPI0008448225 |
| UniProt:A0A1D6KXF7 | MapMan:35.1 | : | : | : | : |
Description
VAN3-binding protein
Coordinates
chr1:+:257400612..257406810
Molecular Weight (calculated)
49449.7 Da
IEP (calculated)
9.883
GRAVY (calculated)
-0.243
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDPRARTST VAAGELRPPE PPLDPLEFLS RSWSASGRAF APPPPTPPPA AHALAASPIA EDPSCEFDDG VAAAAAASGS SFSFASAATS QLIMERILAQ
101: SQEVAPLTSG RLSHSSGPLN GGGSLSDSPP VSPEIDDAKY CRAVSTPKPQ AYRAGNKTVG RWLKDRKEKK KEETRAHNAQ VHAAVSVAAV AAAVAAVAAA
201: TAAASASGKD ERAARTDMAV ASAATLVAAQ CVEAAESIGA EREHLEAVVG SAVNVRTPGD IVTVTAAAAT ALRGAATLKA RALKEVWNIA AVIPVEKGAV
301: GGGGGGGGGG HNQKHGASKQ QQQHRKLESN GSSVSDVSLE EENNFLGICS QELLARGTEL LKRTRKGALH WKVVSVYINR MGLVMLKMKS RHVAGTITKK
401: KKSVVIDVCR DVPAWAGRHL LEDGEHRRYF GLRTAEHRVI EFECGSQREH EMWIKGVARL LSIAGERRRL VA
101: SQEVAPLTSG RLSHSSGPLN GGGSLSDSPP VSPEIDDAKY CRAVSTPKPQ AYRAGNKTVG RWLKDRKEKK KEETRAHNAQ VHAAVSVAAV AAAVAAVAAA
201: TAAASASGKD ERAARTDMAV ASAATLVAAQ CVEAAESIGA EREHLEAVVG SAVNVRTPGD IVTVTAAAAT ALRGAATLKA RALKEVWNIA AVIPVEKGAV
301: GGGGGGGGGG HNQKHGASKQ QQQHRKLESN GSSVSDVSLE EENNFLGICS QELLARGTEL LKRTRKGALH WKVVSVYINR MGLVMLKMKS RHVAGTITKK
401: KKSVVIDVCR DVPAWAGRHL LEDGEHRRYF GLRTAEHRVI EFECGSQREH EMWIKGVARL LSIAGERRRL VA
001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.