Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63300.1 | CDX69650 | AT5G13300.1 | 19363154 |
| AT3G63300.1 | CDY09784 | AT5G13300.1 | 19363154 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53717 | Canola | nucleus | 98.37 | 98.37 |
| AT3G63300.1 | Thale cress | plastid | 88.59 | 87.35 |
| KRH67258 | Soybean | nucleus | 52.34 | 67.28 |
| KRH71381 | Soybean | nucleus | 62.53 | 63.83 |
| KRG95576 | Soybean | nucleus | 62.73 | 63.51 |
| KRH32056 | Soybean | nucleus | 61.71 | 62.99 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 60.9 | 62.55 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 57.64 | 62.33 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 46.44 | 62.13 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 58.25 | 61.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 56.62 | 61.23 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 55.4 | 61.12 |
| PGSC0003DMT400049811 | Potato | plastid | 60.08 | 61.08 |
| Solyc09g065590.2.1 | Tomato | plastid | 60.29 | 60.78 |
| CDY29764 | Canola | nucleus | 54.58 | 60.5 |
| CDY16256 | Canola | cytosol | 48.68 | 59.75 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 55.6 | 59.48 |
| CDX94730 | Canola | cytosol | 54.18 | 59.24 |
| CDY36869 | Canola | nucleus, plastid | 20.98 | 59.2 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 55.8 | 59.05 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 55.6 | 58.96 |
| CDY22328 | Canola | plastid | 53.97 | 58.76 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 55.19 | 58.41 |
| CDY14898 | Canola | cytosol | 53.36 | 58.09 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 56.42 | 56.76 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 53.97 | 56.26 |
| Zm00001d033283_P001 | Maize | cytosol | 53.97 | 56.14 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 53.56 | 56.08 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 53.56 | 55.96 |
| KXG37970 | Sorghum | cytosol | 53.56 | 55.84 |
| Zm00001d030661_P001 | Maize | cytosol | 52.34 | 55.63 |
| Os03t0635800-01 | Rice | nucleus | 42.36 | 55.03 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 52.55 | 55.01 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 10.79 | 54.64 |
| Os12t0604200-00 | Rice | nucleus | 40.53 | 53.64 |
| CDY46598 | Canola | mitochondrion | 52.34 | 53.21 |
| CDX96925 | Canola | plastid | 52.34 | 52.45 |
| CDY36868 | Canola | nucleus | 24.44 | 52.17 |
| CDX68890 | Canola | cytosol | 31.77 | 36.53 |
| CDX75286 | Canola | cytosol | 31.57 | 36.3 |
| CDY65120 | Canola | cytosol | 26.88 | 32.75 |
| CDY09634 | Canola | nucleus | 27.09 | 32.52 |
| CDY64500 | Canola | cytosol | 26.27 | 32.01 |
| CDY32269 | Canola | cytosol | 23.42 | 30.42 |
| CDX77767 | Canola | nucleus | 24.85 | 30.05 |
| CDY59298 | Canola | nucleus | 24.64 | 29.8 |
| CDY02766 | Canola | cytosol | 24.64 | 29.23 |
| CDY50798 | Canola | cytosol, endoplasmic reticulum, nucleus | 24.44 | 29.2 |
| CDY51283 | Canola | cytosol | 24.03 | 28.78 |
| CDY40515 | Canola | cytosol | 25.25 | 28.25 |
Protein Annotations
| EnsemblPlants:CDX93914 | EnsemblPlantsGene:GSBRNA2T00156733001 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF8 |
| PFAM:PF05703 | PFAM:PF08458 | ProteinID:CDX93914 | ProteinID:CDX93914.1 | SEG:seg | UniParc:UPI0004EE417C |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC04g20730D
Coordinates
chrLK031878:-:633337..635849
Molecular Weight (calculated)
52400.9 Da
IEP (calculated)
9.781
GRAVY (calculated)
-0.409
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MEREMRRPNP INSSRRPDIG AGSTQLPESP RGPMEFLSRS WSVSALEVSR ALHTAKAAGP STTRTPSLNA ASIPEETNPE KEECQAENSQ FSFAASATSQ
101: LVLERIMSQS EVSPLTSGRL SHSSGPLNGG GSFTETDSPP ISPSDDFDDV VKYFRSHNTI QPLFTGTGGT RGTTGNGSNT PVAGAPPKTV GRWLKDRKEK
201: KKEESRAHNA HVHAAVSVAA VASAVAAIAA ATAASSQGKN EQMARVDMAM ASAAALVAAQ CVEAAENMGA ERDHLASVVS SAVNVKSHDD IVTLTAAAAT
301: ALRGAATLKA RALKEVWNIA AALPADKGAS SALCGQVETK HSGSSFSGEL PIAGEDFLGV CNQELLAKGT ELLKRTRGAG DLHWKIVSVY MNKTGQVVLK
401: MKSKHVGGTF TKKKKHMVLE VKKDIAAWAG RDLFNGDKHH YFGLKTETKR VIEFECRNER EYEIWTQGVS RLVAIAAERK QKNSMSKWTA P
101: LVLERIMSQS EVSPLTSGRL SHSSGPLNGG GSFTETDSPP ISPSDDFDDV VKYFRSHNTI QPLFTGTGGT RGTTGNGSNT PVAGAPPKTV GRWLKDRKEK
201: KKEESRAHNA HVHAAVSVAA VASAVAAIAA ATAASSQGKN EQMARVDMAM ASAAALVAAQ CVEAAENMGA ERDHLASVVS SAVNVKSHDD IVTLTAAAAT
301: ALRGAATLKA RALKEVWNIA AALPADKGAS SALCGQVETK HSGSSFSGEL PIAGEDFLGV CNQELLAKGT ELLKRTRGAG DLHWKIVSVY MNKTGQVVLK
401: MKSKHVGGTF TKKKKHMVLE VKKDIAAWAG RDLFNGDKHH YFGLKTETKR VIEFECRNER EYEIWTQGVS RLVAIAAERK QKNSMSKWTA P
001: MERELRRPNP INSSRRPEIF SSGGSSTQLP ESPRGPMEFL SRSWSVSALE VSRALHTAKS ASATNRPPSS INTPIPEETL NPEKEECPPE NSTSVSSQFS
101: FAASATSQLV LERIMSQSEV SPLTSGRLSH SSGPLNGGGS FTETDSPPIS PSDEFDDVIK YFRTHNTIHP LFSGTGGSRG TTGNGSNTPM AGTGPKTVGR
201: WLKDRKEKKK EETRTQNAQV HAAVSVAAVA SAVAAVAAAT AASSPGKNEQ MARIDMAMAS AAALVAAQCV EAAEIMGADR DHLTSVVSSA VNVKSHDDIV
301: TLTAAAATAL RGAATLKARA LKEVWNIAAV LPAEKGASSA LCGQVDTKHS DSSFSGELPV AGEDFLGVCN QELLAKGTEL LKRTRGGELH WKIVSVYINK
401: AGQAVLKMKS KHVGGTFTKK KKHMVLEVRK DIPAWAGRDL FNGDKHHYFG LKTETKRVIE FECRNQREYE IWTQGVSRLL AIAAEKKQKS SMSKWMAP
101: FAASATSQLV LERIMSQSEV SPLTSGRLSH SSGPLNGGGS FTETDSPPIS PSDEFDDVIK YFRTHNTIHP LFSGTGGSRG TTGNGSNTPM AGTGPKTVGR
201: WLKDRKEKKK EETRTQNAQV HAAVSVAAVA SAVAAVAAAT AASSPGKNEQ MARIDMAMAS AAALVAAQCV EAAEIMGADR DHLTSVVSSA VNVKSHDDIV
301: TLTAAAATAL RGAATLKARA LKEVWNIAAV LPAEKGASSA LCGQVDTKHS DSSFSGELPV AGEDFLGVCN QELLAKGTEL LKRTRGGELH WKIVSVYINK
401: AGQAVLKMKS KHVGGTFTKK KKHMVLEVRK DIPAWAGRDL FNGDKHHYFG LKTETKRVIE FECRNQREYE IWTQGVSRLL AIAAEKKQKS SMSKWMAP
Arabidopsis Description
VABVAN3-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.