CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32269	Canola	cytosol	79.04	91.8
AT4G16670.1	Thale cress	cytosol	80.87	82.75
CDY64500	Canola	cytosol	43.51	47.39
CDY65120	Canola	cytosol	42.37	46.15
CDY09634	Canola	nucleus	42.14	45.23
GSMUA_Achr8P11040_001	Banana	cytosol	33.49	43.88
GSMUA_Achr11P...	Banana	nucleus	37.59	41.67
TraesCS6A01G250400.1	Wheat	cytosol	36.45	41.56
TraesCS6B01G275000.1	Wheat	cytosol	36.45	41.45
TraesCS6D01G232200.2	Wheat	cytosol	36.45	41.03
CDY59298	Canola	nucleus	37.59	40.64
Os10t0560000-01	Rice	cytosol	35.08	40.63
HORVU0Hr1G027000.1	Barley	cytosol	35.99	40.51
HORVU0Hr1G032140.1	Barley	cytosol	35.99	40.51
CDX77767	Canola	nucleus	37.13	40.15
TraesCS1A01G220700.1	Wheat	cytosol	34.85	39.84
HORVU6Hr1G062990.1	Barley	cytosol	35.99	39.6
TraesCS1B01G234200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.62	39.58
HORVU1Hr1G056150.4	Barley	cytosol, nucleus	34.17	39.16
Zm00001d000175_P001	Maize	plastid	35.08	38.79
TraesCS3A01G147100.2	Wheat	cytosol, endoplasmic reticulum, nucleus	33.71	38.44
TraesCS5A01G540500.1	Wheat	cytosol	32.12	38.01
EER94492	Sorghum	cytosol, endoplasmic reticulum, nucleus	35.54	37.96
KXG31087	Sorghum	nucleus	36.9	37.94
TraesCS4D01G363600.1	Wheat	mitochondrion, nucleus	34.17	37.88
Zm00001d029886_P001	Maize	vacuole	33.49	37.12
TraesCS1D01G222200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.85	36.87
Zm00001d051361_P001	Maize	plastid	35.99	36.83
TraesCS5A01G540300.1	Wheat	extracellular	34.17	36.76
TraesCS4B01G373700.1	Wheat	nucleus	33.26	36.32
CDY29764	Canola	nucleus	28.02	27.77
CDX68890	Canola	cytosol	26.88	27.63
CDX75286	Canola	cytosol	26.88	27.63
CDY14898	Canola	cytosol	28.02	27.27
CDY16256	Canola	cytosol	24.83	27.25
CDX94730	Canola	cytosol	27.79	27.17
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	28.7	27.1
CDY22328	Canola	plastid	27.79	27.05
CDY36869	Canola	nucleus, plastid	10.48	26.44
CDY46598	Canola	mitochondrion	28.02	25.47
CDX93914	Canola	nucleus	28.25	25.25
CDY53717	Canola	nucleus	28.25	25.25
CDX96925	Canola	plastid	28.02	25.1
CDY36868	Canola	nucleus	11.16	21.3
CDY02766	Canola	cytosol	19.82	21.01
CDY51283	Canola	cytosol	19.13	20.49
CDY50798	Canola	cytosol, endoplasmic reticulum, nucleus	18.45	19.71

Protein Annotations

EnsemblPlants:CDY40515	EnsemblPlantsGene:GSBRNA2T00069816001	Gene3D:2.30.29.30	InterPro:DUF828	InterPro:IPR001849	InterPro:IPR011993
InterPro:PH-like_dom_sf	InterPro:PH_domain	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF2	PFAM:PF05703
PFAM:PF08458	PFscan:PS50003	ProteinID:CDY40515	ProteinID:CDY40515.1	SEG:seg	SMART:SM00233
SUPFAM:SSF50729	UniParc:UPI0004EE52FC	UniProt:A0A078HPQ7	MapMan:35.2	:	:

Description

BnaC01g19970DBnaC01g19970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPQ7]

Coordinates

chrLK032473:-:97371..100291

Molecular Weight (calculated)

47324.7 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.434

Length

439 amino acids

Sequence
(BLAST)

001: MDKECTLTLF PYGLQEVAEV EEIEEDNDNE SMTLSSVPEN ETSECSSSPE TYPPIPPRPK TPREPMEFLC RSWSSSTSEI SLALSSQKSN KQLNKTHTLS
101: ELAGVTSPAP APLPPPLRAE KPASVVHARR TSAIGKWFHH RDFVGGKVSG ISKRDKSRYE NAHLHTAVSI ASLATAIAAV TASGNQDGAL MESKMSSALA
201: SASELLASHC VELAELSGAG HDRVVTAVRS AVDVRGPGDL LTLTAAAATA LRGEAALRTR LPKEAKNNAA ISPCERALPE THDCSSELDS ASTTTEEQAS
301: AQGVEESDLK CNGELMQCTR NGVLRWKHMK VYINKKSQVV VEIKSKHVRG AFSMKSKGSI VNDVCETVTG LQSVKETENA EEKELYFGIS TGKGLTKFKC
401: KSKADKQTWV DSIRNLLHRV TAVETINTSL ETTNIGDST

Best Arabidopsis Sequence Match ( AT4G16670.1 )
(BLAST)

001: MEYDRTLNLI PYGLQGVREE EEIEEDDEES MTLSSVPENE TSECSSPPAT YPPIPPRPKT PREPMEFLCR SWSLSTSEIS LALSSQKSDK QLNKNPNISQ
101: LADVTSLAPV APPPPLQTGK LASAVHARRT GTIGKWFHHR EFVGGKVSAV KKRDRVRVEK AHLHSAVSIA SLATAIAAVT ASGNQDGFAG SKMSSALASA
201: SELLASHCLE LAELAGADHD RVVSAVRSAV DVRGPGDLLT LTAAAATALR GEAALRVRLP KEAKNSAAIS PCERVLPETH SCSSELDRTS TTDELISAKG
301: VEESTGELMQ CTRNGVLRWK HVKVYINKKS QVIVEIKSKH VVGAFSMKSK GIVNDVCETV SGLQNGKDTE NTEEELYFGI GTGKGLTKFK CKSKADKQTW
401: VDSIRNLLHR VTAVEVDTSL ETININDST

Arabidopsis Description

At4g16670 [Source:UniProtKB/TrEMBL;Acc:Q5HZ31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.