Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 90.12 | 97.4 |
| TraesCS1A01G220700.1 | Wheat | cytosol | 88.92 | 96.09 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 87.23 | 94.03 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 85.54 | 92.69 |
| Os10t0560000-01 | Rice | cytosol | 69.64 | 76.25 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 68.19 | 68.86 |
| Zm00001d000175_P001 | Maize | plastid | 65.78 | 68.77 |
| Zm00001d029886_P001 | Maize | vacuole | 63.37 | 66.41 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 57.11 | 59.85 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 47.71 | 59.1 |
| GSMUA_Achr11P... | Banana | nucleus | 51.08 | 53.54 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 48.19 | 51.28 |
| AT4G17350.1 | Thale cress | cytosol | 40.72 | 41.73 |
| CDY09634 | Canola | nucleus | 40.96 | 41.56 |
| PGSC0003DMT400012161 | Potato | nucleus | 38.8 | 41.28 |
| CDY65120 | Canola | cytosol | 40.0 | 41.19 |
| Bra026246.1-P | Field mustard | nucleus | 39.76 | 40.94 |
| CDY64500 | Canola | cytosol | 39.52 | 40.69 |
| Solyc08g078500.2.1 | Tomato | cytosol | 38.07 | 40.51 |
| KRH28119 | Soybean | nucleus | 38.07 | 40.41 |
| KRH04152 | Soybean | nucleus | 37.59 | 39.69 |
| KRH57434 | Soybean | nucleus | 37.11 | 39.09 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 36.63 | 38.87 |
| AT5G47440.1 | Thale cress | nucleus | 37.35 | 38.18 |
| Bra024944.1-P | Field mustard | cytosol | 36.63 | 37.53 |
| CDX77767 | Canola | nucleus | 36.39 | 37.19 |
| CDY59298 | Canola | nucleus | 36.39 | 37.19 |
| CDY40515 | Canola | cytosol | 36.87 | 34.85 |
| CDY32269 | Canola | cytosol | 31.57 | 34.66 |
| Bra038497.1-P | Field mustard | nucleus | 35.9 | 34.57 |
| AT4G16670.1 | Thale cress | cytosol | 35.42 | 34.27 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 34.46 | 30.43 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 33.49 | 30.02 |
| TraesCS3D01G163000.1 | Wheat | cytosol | 30.6 | 29.67 |
| TraesCS2D01G352200.1 | Wheat | cytosol | 24.34 | 23.99 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G222200.1 | EnsemblPlantsGene:TraesCS1D01G222200 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF5 |
| PFAM:PF05703 | PFAM:PF08458 | SEG:seg | SUPFAM:SSF50729 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1D:-:309971060..309973216
Molecular Weight (calculated)
44654.2 Da
IEP (calculated)
9.266
GRAVY (calculated)
-0.185
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMERGWKAG SAFRFDVVEE EDEAAAAAIP PPQTPLEPME YLSRSWSVSA SEISKILVGG KKSCFNRLPL QEMGIPEASA VLATTAIVPS YRHHVSEQST
101: AHSHAVSALS FLNVSVCCVA IFEQTDARRS SISGIGHHQS IGKWFQHKDA SRSRQSSKEK LRADRAHVHA MVSVVRVAAA VAAVAAASTS SDTQASKMAA
201: AMAPATELLA SHCVEVARLA GASHEQVASA VQSAVGVRSA GDLTTLTAAA ATALRGAATM KQRVQREAAR SNASVLPYEK GHSWSPDVWC KEGELLKRTR
301: KGDLHRTKVC VYINRRSQVM LKLKSKHIGG ALSKNNKSVV YGVYSKLPTW VIEPGKAFMD EKCCFGLSTA QGIVEFECQD GTSKQNWVDD VQNLLRQVAA
401: DDRVGDKLES VVKVG
101: AHSHAVSALS FLNVSVCCVA IFEQTDARRS SISGIGHHQS IGKWFQHKDA SRSRQSSKEK LRADRAHVHA MVSVVRVAAA VAAVAAASTS SDTQASKMAA
201: AMAPATELLA SHCVEVARLA GASHEQVASA VQSAVGVRSA GDLTTLTAAA ATALRGAATM KQRVQREAAR SNASVLPYEK GHSWSPDVWC KEGELLKRTR
301: KGDLHRTKVC VYINRRSQVM LKLKSKHIGG ALSKNNKSVV YGVYSKLPTW VIEPGKAFMD EKCCFGLSTA QGIVEFECQD GTSKQNWVDD VQNLLRQVAA
401: DDRVGDKLES VVKVG
001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.