CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000175_P001	Maize	plastid	86.13	89.17
Zm00001d029886_P001	Maize	vacuole	79.32	82.32
Os10t0560000-01	Rice	cytosol	71.29	77.31
TraesCS1B01G234200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	69.1	73.96
TraesCS1A01G220700.1	Wheat	cytosol	69.1	73.96
HORVU1Hr1G056150.4	Barley	cytosol, nucleus	68.13	73.11
TraesCS3A01G147100.2	Wheat	cytosol, endoplasmic reticulum, nucleus	68.13	72.73
TraesCS1D01G222200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	68.86	68.19
GSMUA_Achr8P11040_001	Banana	cytosol	49.39	60.6
GSMUA_Achr11P...	Banana	nucleus	53.53	55.56
KXG31087	Sorghum	nucleus	50.61	48.71
PGSC0003DMT400012161	Potato	nucleus	40.63	42.82
AT4G17350.1	Thale cress	cytosol	42.09	42.72
Solyc08g078500.2.1	Tomato	cytosol	40.39	42.56
CDY09634	Canola	nucleus	42.34	42.54
CDY65120	Canola	cytosol	41.61	42.43
KRH04152	Soybean	nucleus	40.39	42.24
CDY64500	Canola	cytosol	41.36	42.18
Bra026246.1-P	Field mustard	nucleus	41.36	42.18
KRH57434	Soybean	nucleus	39.66	41.37
KRH28119	Soybean	nucleus	39.17	41.18
KRH77342	Soybean	cytosol, endoplasmic reticulum, nucleus	37.96	39.9
AT5G47440.1	Thale cress	nucleus	39.17	39.66
CDX77767	Canola	nucleus	37.71	38.18
Bra024944.1-P	Field mustard	cytosol	37.23	37.78
CDY59298	Canola	nucleus	36.74	37.19
AT4G16670.1	Thale cress	cytosol	37.71	36.13
CDY40515	Canola	cytosol	37.96	35.54
CDY32269	Canola	cytosol	31.87	34.66
Bra038497.1-P	Field mustard	nucleus	36.01	34.34
OQU86061	Sorghum	cytosol	33.58	32.32
KXG37970	Sorghum	cytosol	34.31	29.94
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	35.28	29.71
OQU81872	Sorghum	cytosol	25.55	26.05

Protein Annotations

EnsemblPlants:EER94492	EnsemblPlantsGene:SORBI_3001G298500	EntrezGene:8055650	InterPro:DUF828	InterPro:PH_pln	ncoils:Coil
PANTHER:PTHR31351	PANTHER:PTHR31351:SF5	PFAM:PF05703	PFAM:PF08458	ProteinID:EER94492	ProteinID:EER94492.1
RefSeq:XP_002467494.1	SEG:seg	SUPFAM:SSF50729	unigene:Sbi.6431	UniParc:UPI0001A82F3A	UniProt:C5WSC8
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:57941051..57943115

Molecular Weight (calculated)

44027.3 Da

IEP (calculated)

9.389

GRAVY (calculated)

-0.323

Length

411 amino acids

Sequence
(BLAST)

001: MAMEKKSSWK ATRDVAAGAF SMDCLELVGE EDDDDAVPAI PPPQTPMEPM EYLSRSWSVS ASEISKILVG GGGKKSSAAV AAASRLPPEV TIPELSVLAT
101: TSSSIVPLPC HHQQHRDARR SSMSSGHYHH HHQSIGKWFQ VHHRETCRAK QSGKEKQRAD KAHVHAMVSV ARVAAAVAAV AASTATSSDS TQAATKMATA
201: MASATELLAS HCVEAAQLAG ARHDQVAAAV QAAVGVRSPG DLMTLTAAAA TSLRGAATLK QRVQRETRSN ASVLPYEKAN SWSPDIWCKE GELLKRTRKG
301: GLHKIRVSIY INKRSQVILK LKSKHIGGAL SKNNKSVVYG VYSELPTWAE PGKDSTEETC CFGLSTAQGL VEFECEGNAS KQKWVDDVQN LLRQAALHDQ
401: VGNKLGLVKL S

Best Arabidopsis Sequence Match ( AT4G17350.1 )
(BLAST)

001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT

Arabidopsis Description

At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.