Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P11040_001 | Banana | cytosol | 66.92 | 79.1 |
| Os10t0560000-01 | Rice | cytosol | 59.09 | 61.74 |
| HORVU1Hr1G056150.4 | Barley | cytosol, nucleus | 53.79 | 55.61 |
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 53.79 | 55.47 |
| TraesCS1A01G220700.1 | Wheat | cytosol | 53.79 | 55.47 |
| Zm00001d000175_P001 | Maize | plastid | 54.29 | 54.16 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 52.27 | 53.77 |
| Zm00001d029886_P001 | Maize | vacuole | 53.54 | 53.54 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 55.56 | 53.53 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 51.77 | 51.77 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 53.54 | 51.08 |
| TraesCS5A01G540500.1 | Wheat | cytosol | 46.97 | 50.13 |
| TraesCS5A01G540300.1 | Wheat | extracellular | 51.52 | 50.0 |
| TraesCS4B01G373700.1 | Wheat | nucleus | 50.76 | 50.0 |
| AT4G17350.1 | Thale cress | cytosol | 48.23 | 47.16 |
| CDY65120 | Canola | cytosol | 47.98 | 47.15 |
| CDY64500 | Canola | cytosol | 47.98 | 47.15 |
| Bra026246.1-P | Field mustard | nucleus | 47.73 | 46.9 |
| KRH04152 | Soybean | nucleus | 46.21 | 46.56 |
| KRH57434 | Soybean | nucleus | 46.21 | 46.45 |
| KRH28119 | Soybean | nucleus | 45.45 | 46.04 |
| CDY09634 | Canola | nucleus | 46.97 | 45.48 |
| Solyc08g078500.2.1 | Tomato | cytosol | 44.7 | 45.38 |
| PGSC0003DMT400012161 | Potato | nucleus | 44.7 | 45.38 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 44.7 | 45.27 |
| AT5G47440.1 | Thale cress | nucleus | 45.2 | 44.09 |
| Bra024944.1-P | Field mustard | cytosol | 43.18 | 42.22 |
| CDY59298 | Canola | nucleus | 42.93 | 41.87 |
| CDX77767 | Canola | nucleus | 42.68 | 41.63 |
| AT4G16670.1 | Thale cress | cytosol | 41.16 | 38.0 |
| CDY40515 | Canola | cytosol | 41.67 | 37.59 |
| CDY32269 | Canola | cytosol | 35.1 | 36.77 |
| Bra038497.1-P | Field mustard | nucleus | 39.9 | 36.66 |
| GSMUA_Achr10P... | Banana | nucleus | 36.11 | 35.57 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 8.59 | 35.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.64 | 33.7 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 38.64 | 33.7 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 30.05 | 32.43 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 36.11 | 32.13 |
| GSMUA_Achr4P02070_001 | Banana | cytosol | 23.74 | 24.23 |
| GSMUA_Achr10P... | Banana | cytosol | 23.23 | 23.83 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P04580_001 | EnsemblPlants:GSMUA_Achr11T04580_001 | EnsemblPlantsGene:GSMUA_Achr11G04580_001 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 |
| PANTHER:PTHR31351:SF5 | PFAM:PF05703 | PFAM:PF08458 | SEG:seg | UniParc:UPI000295B179 | UniProt:M0RPD8 |
| MapMan:35.1 | : | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G04580_001]
Coordinates
chr11:+:3460150..3461759
Molecular Weight (calculated)
43289.8 Da
IEP (calculated)
9.879
GRAVY (calculated)
-0.405
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKGYLWGRK KKDEMYISQD LVAEVEEETL EGGLKMPAIP PPQTPHEPME FLSRSWSVSA SEISKALLAG NKKSNFVVDQ LPEMMIPENL VIAAAGSPQS
101: TSKRPRRGIN SILTHHATIG KWFHHMETNR TKAKSKEKAR AEKARVHAAV SVAGVAAAVA AITAASTSEN RPSKMSAAMA SATEILASHC VEIADQAGAG
201: HQHLASAIRS AVDVKTAGDL MTLTAAAATA LRAAAALKSR SQREARNNAA VIPYEKGHRG NPDIWRKEGE LLKRTEQDSF HFAGTLHWKR VSVYINKKSQ
301: VMVELKSKHI GGALSKKKKS VVYGLYDGIP AWSGRARECA EQRCYFGLRT AQGLIEFECE NSVSKKKWVD GVHNLLREVS GEAEQIEDSM ELLNLS
101: TSKRPRRGIN SILTHHATIG KWFHHMETNR TKAKSKEKAR AEKARVHAAV SVAGVAAAVA AITAASTSEN RPSKMSAAMA SATEILASHC VEIADQAGAG
201: HQHLASAIRS AVDVKTAGDL MTLTAAAATA LRAAAALKSR SQREARNNAA VIPYEKGHRG NPDIWRKEGE LLKRTEQDSF HFAGTLHWKR VSVYINKKSQ
301: VMVELKSKHI GGALSKKKKS VVYGLYDGIP AWSGRARECA EQRCYFGLRT AQGLIEFECE NSVSKKKWVD GVHNLLREVS GEAEQIEDSM ELLNLS
001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
Arabidopsis Description
At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.