Factsheet for TraesCS4D01G363600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G540300.1	Wheat	extracellular	93.94	91.18
TraesCS4B01G373700.1	Wheat	nucleus	90.4	89.05
TraesCS5A01G540500.1	Wheat	cytosol	82.32	87.87
GSMUA_Achr8P11040_001	Banana	cytosol	50.0	59.1
TraesCS1D01G222200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	59.85	57.11
GSMUA_Achr11P...	Banana	nucleus	51.77	51.77
TraesCS6D01G232200.2	Wheat	cytosol	50.0	50.77
PGSC0003DMT400012161	Potato	nucleus	40.66	41.28
KRH28119	Soybean	nucleus	40.4	40.92
CDY09634	Canola	nucleus	41.92	40.59
Solyc08g078500.2.1	Tomato	cytosol	39.9	40.51
AT4G17350.1	Thale cress	cytosol	41.16	40.25
CDY65120	Canola	cytosol	40.91	40.2
CDY64500	Canola	cytosol	40.66	39.95
Bra026246.1-P	Field mustard	nucleus	40.66	39.95
KRH04152	Soybean	nucleus	39.65	39.95
KRH57434	Soybean	nucleus	39.65	39.85
KRH77342	Soybean	cytosol, endoplasmic reticulum, nucleus	38.89	39.39
AT5G47440.1	Thale cress	nucleus	39.14	38.18
Bra024944.1-P	Field mustard	cytosol	38.38	37.53
CDX77767	Canola	nucleus	38.38	37.44
CDY59298	Canola	nucleus	38.13	37.19
AT4G16670.1	Thale cress	cytosol	38.13	35.2
CDY40515	Canola	cytosol	37.88	34.17
Bra038497.1-P	Field mustard	nucleus	36.36	33.41
CDY32269	Canola	cytosol	31.57	33.07
TraesCS3D01G163000.1	Wheat	cytosol	33.59	31.07
TraesCS5D01G067900.2	Wheat	nucleus	35.86	30.21
TraesCS5D01G387600.1	Wheat	nucleus	34.34	29.37
TraesCS2D01G352200.1	Wheat	cytosol	24.24	22.8

Protein Annotations

EnsemblPlants:TraesCS4D01G363600.1	EnsemblPlantsGene:TraesCS4D01G363600	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF5
PFAM:PF05703	PFAM:PF08458	SEG:seg	SUPFAM:SSF50729	MapMan:35.2	:

Description

No Description!

Coordinates

chr4D:+:509173212..509174996

Molecular Weight (calculated)

42982.5 Da

IEP (calculated)

10.112

GRAVY (calculated)

-0.347

Length

396 amino acids

Sequence
(BLAST)

001: MERVCKRRPG MPPALLLALH GVDEQHMPAP SVPPPQTPME PMEYLSRSWS VSADEISKAL LLKGATKRSF FAPADSLLPA TILDTETSSY ELLAASGQQL
101: QRQQHLDHVT GRSSISCHRH SNSVTRWYFQ HKETARHGRK EKARADRAQA HAMVSVAQVS AAVAAVTAAT SRDNQDSKIA AAMASATKLL ASHCAEAAQL
201: AGAGHEQVSS AVRSAVGVAG PGDLMTLTAA AATALRGAAT LKKRVQREAR SNATVIPYEK APLSSSPDIW CKEGKLLKRT RKGDLHKRRV SIYINKRSQV
301: ILKLKSKHIG GALSKNNKSV VYGVYSELPE WTEPGKCLPE TCCFGLSTAQ GLIEFKCESS TSKQSWVHGV QNLLQQVDVA EQVGHRLETL KLNWCS

Best Arabidopsis Sequence Match ( AT5G47440.1 )
(BLAST)

001: MEGGFYSDWN DSSSSLFGSE NPEHELEEGN VRSEEIVSQI PQPQTPREPM KFLSRSWSLS ASEISKALAQ KQRQQRDLFS VSQNSPRGFF QDVAADPLMA
101: ENIMNSAGTR RSGRLSKWFH HKQHTNPSTM RIPRKKDKAR VQKAHVHSAV SIAALAAGLA SVTSEESCSK ESCSMMALAL ASATELLASH CIDMAEQAGA
201: DHTCVASTVR SSVDIHSPGD LMTLTAAAAT ALRGEAALKV RQPKESRKNA TITPCERSFS DSHWPGENCQ FRLEEPNLPL EGELVQCARN GLQRNKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEISAWP CRKERENSEE VYFGLKTGQG LLEFKCKSKI QKQRWVAGIQ SNLRLVSCLE AAKCSLESLS
401: LSNRMR

Arabidopsis Description

At5g47440 [Source:UniProtKB/TrEMBL;Acc:Q9FGL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.