Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G250400.1 | Wheat | cytosol | 96.41 | 97.66 |
| TraesCS6B01G275000.1 | Wheat | cytosol | 95.38 | 96.37 |
| HORVU0Hr1G032140.1 | Barley | cytosol | 94.36 | 94.36 |
| HORVU0Hr1G027000.1 | Barley | cytosol | 94.36 | 94.36 |
| HORVU6Hr1G062990.1 | Barley | cytosol | 93.59 | 91.48 |
| KXG31087 | Sorghum | nucleus | 75.64 | 69.09 |
| Zm00001d051361_P001 | Maize | plastid | 74.62 | 67.83 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 50.77 | 50.0 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 51.28 | 48.19 |
| KRH28119 | Soybean | nucleus | 43.85 | 43.73 |
| PGSC0003DMT400012161 | Potato | nucleus | 42.82 | 42.82 |
| KRH04152 | Soybean | nucleus | 43.08 | 42.75 |
| CDY64500 | Canola | cytosol | 44.1 | 42.68 |
| Solyc08g078500.2.1 | Tomato | cytosol | 42.56 | 42.56 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 42.56 | 42.46 |
| CDY65120 | Canola | cytosol | 43.59 | 42.18 |
| CDY09634 | Canola | nucleus | 44.1 | 42.05 |
| AT4G17350.1 | Thale cress | cytosol | 43.59 | 41.98 |
| Bra026246.1-P | Field mustard | nucleus | 43.33 | 41.94 |
| KRH57434 | Soybean | nucleus | 42.31 | 41.88 |
| AT5G47440.1 | Thale cress | nucleus | 41.79 | 40.15 |
| CDX77767 | Canola | nucleus | 41.79 | 40.15 |
| CDY59298 | Canola | nucleus | 41.54 | 39.9 |
| Bra024944.1-P | Field mustard | cytosol | 41.28 | 39.75 |
| AT4G16670.1 | Thale cress | cytosol | 41.28 | 37.53 |
| Bra038497.1-P | Field mustard | nucleus | 40.77 | 36.89 |
| CDY32269 | Canola | cytosol | 35.38 | 36.51 |
| CDY40515 | Canola | cytosol | 41.03 | 36.45 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 39.23 | 32.55 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 38.21 | 32.18 |
| TraesCS3D01G163000.1 | Wheat | cytosol | 33.59 | 30.61 |
| TraesCS2D01G352200.1 | Wheat | cytosol | 25.9 | 23.99 |
Protein Annotations
Description
No Description!
Coordinates
chr6D:+:325773676..325775025
Molecular Weight (calculated)
41487.5 Da
IEP (calculated)
10.564
GRAVY (calculated)
-0.296
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGYLLGRTK RRDHLLLMDG AGAVQSPQTP VEPMEFLSRS WSVSASDLSK VLAVGGGRRS SNFVVDRLSG MLMPETLALA AASGTGSPKK RVRSQTCRSR
101: SAISAHHHTI GRWFHHKDGG SRVDKARAER ARVHAAVSVA SVAAAVAALA AGAANPEDGE DAKMDAALAS ATQLLASHCI EFAELAGADH DQVASAVEGA
201: VDVRSPGDLL TLTAAAATAL RGATALRLRE QREARSKAAV APSEKAGSCG ADIWCKEGTL LKRSRKGGAL RWKRVSVYIN KRSQVIVKLK SKHIGGAFSK
301: KKRSVVYGVH GDMPAWPPGH KPCGMPDSAT AAPENRHFGL RTAQGLVEFE CESRMHKQEW VESVKNLLRQ AAGGTAQLEH SFESLRLSAS
101: SAISAHHHTI GRWFHHKDGG SRVDKARAER ARVHAAVSVA SVAAAVAALA AGAANPEDGE DAKMDAALAS ATQLLASHCI EFAELAGADH DQVASAVEGA
201: VDVRSPGDLL TLTAAAATAL RGATALRLRE QREARSKAAV APSEKAGSCG ADIWCKEGTL LKRSRKGGAL RWKRVSVYIN KRSQVIVKLK SKHIGGAFSK
301: KKRSVVYGVH GDMPAWPPGH KPCGMPDSAT AAPENRHFGL RTAQGLVEFE CESRMHKQEW VESVKNLLRQ AAGGTAQLEH SFESLRLSAS
001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT
Arabidopsis Description
At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.