Factsheet for Zm00001d051361_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31087	Sorghum	nucleus	86.48	86.89
TraesCS6D01G232200.2	Wheat	cytosol	67.83	74.62
TraesCS6B01G275000.1	Wheat	cytosol	67.13	74.61
TraesCS6A01G250400.1	Wheat	cytosol	66.9	74.55
HORVU0Hr1G027000.1	Barley	cytosol	66.67	73.33
HORVU0Hr1G032140.1	Barley	cytosol	66.67	73.33
HORVU6Hr1G062990.1	Barley	cytosol	67.13	72.18
Zm00001d000175_P001	Maize	plastid	47.55	51.39
Zm00001d029886_P001	Maize	vacuole	44.99	48.74
KRH28119	Soybean	nucleus	41.03	45.01
KRH77342	Soybean	cytosol, endoplasmic reticulum, nucleus	40.09	43.99
KRH04152	Soybean	nucleus	39.16	42.75
KRH57434	Soybean	nucleus	38.69	42.13
CDY64500	Canola	cytosol	39.39	41.94
AT4G17350.1	Thale cress	cytosol	39.16	41.48
CDY65120	Canola	cytosol	38.93	41.44
Bra026246.1-P	Field mustard	nucleus	38.69	41.19
CDY09634	Canola	nucleus	38.93	40.83
PGSC0003DMT400012161	Potato	nucleus	37.06	40.77
Solyc08g078500.2.1	Tomato	cytosol	36.83	40.51
CDX77767	Canola	nucleus	37.76	39.9
AT5G47440.1	Thale cress	nucleus	37.53	39.66
CDY59298	Canola	nucleus	37.3	39.41
Bra024944.1-P	Field mustard	cytosol	36.6	38.77
AT4G16670.1	Thale cress	cytosol	37.06	37.06
CDY32269	Canola	cytosol	32.17	36.51
CDY40515	Canola	cytosol	36.83	35.99
Bra038497.1-P	Field mustard	nucleus	36.13	35.96
Zm00001d030661_P001	Maize	cytosol	34.97	32.47
Zm00001d039295_P001	Maize	cytosol	30.07	31.39
Zm00001d033283_P001	Maize	cytosol	33.33	30.3
Zm00001d013705_P001	Maize	cytosol, nucleus, peroxisome	33.1	30.28
Zm00001d003160_P001	Maize	cytosol	21.68	23.02
Zm00001d025771_P001	Maize	cytosol	21.68	21.78

Protein Annotations

EnsemblPlants:Zm00001d051361_P001	EnsemblPlants:Zm00001d051361_T001	EnsemblPlantsGene:Zm00001d051361	Gene3D:2.30.29.30	InterPro:DUF828	InterPro:IPR001849
InterPro:IPR011993	InterPro:PH-like_dom_sf	InterPro:PH_domain	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF2
PFAM:PF05703	PFAM:PF08458	ProteinID:AQK54094.1	SEG:seg	SMART:SM00233	SUPFAM:SSF50729
UniParc:UPI000220EA07	UniProt:K7UXW2	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4:-:155965412..155966998

Molecular Weight (calculated)

45505.1 Da

IEP (calculated)

9.756

GRAVY (calculated)

-0.225

Length

429 amino acids

Sequence
(BLAST)

001: MQHEEVCDTT TCGEGNGRGG EEELEMEGHS LMRMKRRDHL LLTDGAGAGA GAGPLAVQTP MEPMEFLSRS WSVSASEISK VLAGGVGGRR SSNFVVDRLS
101: GMLMPETLAL AASSSSAGTN NISPRKRTLR SRSAISAHQV HHTVHAIGKW FHHWDAGSSK VDKARAERAR VHAAVSVASV AAAVAAVAVA AGASPEVDVT
201: DDGARMGSAL ASATQLLASH CVEAAELAGA DHDQVASAVE TAVDVRSPGD LLTLTAAAAT ALRGAAAMRH RAQREARSRA AVAPYDKACS YRADVWCKEG
301: ALLKRNRKGK RALHWKQVAV YISKKSQVIV KLKSKHIGGA FSKKKKGVVY GVYDDIPAWP AREGVAAQSS APETCHFGLR TAHGLLEFQC ESRAQRRDWV
401: EAVKDLIRQV AGGTALLEHS FESLRLSAS

Best Arabidopsis Sequence Match ( AT4G17350.1 )
(BLAST)

001: MESGFYSDWK DTSSSSFFGS ENMEEELEDG VLRAEELFSS IPQPQTPKEP MEFLSRSWSL STSEISKALA LKHRQQQDQF CVGQNSPPVL FPDAAADPLV
101: AGKIMNSVGT RRAGTLSKWF HHNKEHSTSS TTTNLKKKDK VRVENAHVHS AVSIAALAAG LASVTSASNC KGSGSKMALA LASATELLAS HCVEMAERAG
201: ADHARVTSTV RSSVDIHSPG DLMTLTAAAA TALRGEAALK ARQPKEARKN AAITPFERSF SDSHWHANFQ YRLEEPNLPF EGELMQCARN GVQRTKRVCV
301: YINKKSQVMI KLKSKHVGGA FSKKIKCVVY GVCDEKSAWP YRKERENSEE VYFGLKTGQG LLEFKCKSKI HKQRWVDGVQ SLLRQVNCFE AAKCSLGSLN
401: LTGHT

Arabidopsis Description

At4g17350 [Source:UniProtKB/TrEMBL;Acc:Q5U1F1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.