Factsheet for TraesCS4B01G373700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G363600.1	Wheat	mitochondrion, nucleus	89.05	90.4
TraesCS5A01G540300.1	Wheat	extracellular	90.3	88.97
TraesCS5A01G540500.1	Wheat	cytosol	80.85	87.6
TraesCS1B01G234200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	59.2	61.98
GSMUA_Achr8P11040_001	Banana	cytosol	48.51	58.21
GSMUA_Achr11P...	Banana	nucleus	50.0	50.76
TraesCS6B01G275000.1	Wheat	cytosol	48.26	50.26
PGSC0003DMT400012161	Potato	nucleus	39.3	40.51
KRH28119	Soybean	nucleus	39.05	40.15
CDY09634	Canola	nucleus	40.8	40.1
Solyc08g078500.2.1	Tomato	cytosol	38.56	39.74
AT4G17350.1	Thale cress	cytosol	39.8	39.51
CDY65120	Canola	cytosol	39.55	39.45
CDY64500	Canola	cytosol	39.3	39.21
Bra026246.1-P	Field mustard	nucleus	39.3	39.21
KRH04152	Soybean	nucleus	38.31	39.19
KRH57434	Soybean	nucleus	38.06	38.83
KRH77342	Soybean	cytosol, endoplasmic reticulum, nucleus	37.56	38.62
AT5G47440.1	Thale cress	nucleus	38.56	38.18
CDX77767	Canola	nucleus	37.31	36.95
Bra024944.1-P	Field mustard	cytosol	37.06	36.79
CDY59298	Canola	nucleus	36.82	36.45
AT4G16670.1	Thale cress	cytosol	36.57	34.27
CDY40515	Canola	cytosol	36.32	33.26
Bra038497.1-P	Field mustard	nucleus	35.32	32.95
CDY32269	Canola	cytosol	30.35	32.28
TraesCS5B01G060100.2	Wheat	nucleus	35.32	30.28
TraesCS5B01G381200.1	Wheat	nucleus	34.83	30.17
TraesCS3B01G182000.2	Wheat	mitochondrion	33.83	29.0
TraesCS2B01G372200.1	Wheat	cytosol	24.38	23.28

Protein Annotations

EnsemblPlants:TraesCS4B01G373700.1	EnsemblPlantsGene:TraesCS4B01G373700	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF5
PFAM:PF05703	PFAM:PF08458	SEG:seg	SUPFAM:SSF50729	MapMan:35.1	:

Description

No Description!

Coordinates

chr4B:-:657991932..657993734

Molecular Weight (calculated)

43581.1 Da

IEP (calculated)

9.655

GRAVY (calculated)

-0.348

Length

402 amino acids

Sequence
(BLAST)

001: MEMERVCNRR AGMPPALLLA LHGIDEQMMP ASSLPPPQTP MEPMEYLSRS WSVSADDISK ALLLKGDTKR SFFAPADALL PPSPMPETMT SSSYELLAAP
101: AASSHHQIHH QHLDAKGRGS ISCHRHSNSV TRWYFQHKEA AKHGRKEKAR ADRAQAHAMV SVAQVSAAVA AVTAATSFDN QDSKIAAAMA SATELLASHC
201: AEAAQLAGAG HEQVSSAVRS AVGVTGPGDL MTLTAAAATA LRGAATLKKR VQRESRSNAS VIPYEKAPSS WSPDIWCKEG KLLKRTRKGD LHKRRVSIYI
301: NKRSQVILKL KSKHMGGALS KNNKSVVYGV YSELPEWTEP GKCLPETCCF GLSTAQGLIE FKCESSSSKQ SWVHGVQNLL QQVDVADQVG HRLETLKLNW
401: CS

Best Arabidopsis Sequence Match ( AT4G16670.1 )
(BLAST)

001: MEYDRTLNLI PYGLQGVREE EEIEEDDEES MTLSSVPENE TSECSSPPAT YPPIPPRPKT PREPMEFLCR SWSLSTSEIS LALSSQKSDK QLNKNPNISQ
101: LADVTSLAPV APPPPLQTGK LASAVHARRT GTIGKWFHHR EFVGGKVSAV KKRDRVRVEK AHLHSAVSIA SLATAIAAVT ASGNQDGFAG SKMSSALASA
201: SELLASHCLE LAELAGADHD RVVSAVRSAV DVRGPGDLLT LTAAAATALR GEAALRVRLP KEAKNSAAIS PCERVLPETH SCSSELDRTS TTDELISAKG
301: VEESTGELMQ CTRNGVLRWK HVKVYINKKS QVIVEIKSKH VVGAFSMKSK GIVNDVCETV SGLQNGKDTE NTEEELYFGI GTGKGLTKFK CKSKADKQTW
401: VDSIRNLLHR VTAVEVDTSL ETININDST

Arabidopsis Description

At4g16670 [Source:UniProtKB/TrEMBL;Acc:Q5HZ31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.