Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr4P00060_001 | |
| GSMUA_Achr7P22530_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63300.1 | GSMUA_Achr11P... | AT5G13300.1 | 19363154 |
| AT3G63300.1 | GSMUA_Achr4P00060_001 | AT5G13300.1 | 19363154 |
| AT3G63300.1 | GSMUA_Achr7P22530_001 | AT5G13300.1 | 19363154 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P02990_001 | Banana | nucleus | 85.83 | 69.38 |
| Os03t0635800-01 | Rice | nucleus | 67.3 | 65.34 |
| GSMUA_AchrUn_... | Banana | nucleus | 77.11 | 62.33 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 73.57 | 60.67 |
| CDY16256 | Canola | cytosol | 64.85 | 59.5 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 69.21 | 55.34 |
| CDY36868 | Canola | nucleus | 34.6 | 55.22 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 69.75 | 55.17 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 69.48 | 55.08 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 69.21 | 54.74 |
| KXG37970 | Sorghum | cytosol | 69.21 | 53.93 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 68.39 | 53.52 |
| Zm00001d033283_P001 | Maize | cytosol | 68.12 | 52.97 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 66.48 | 52.93 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 70.3 | 52.87 |
| KRG91356 | Soybean | cytosol | 68.12 | 52.52 |
| KRH35470 | Soybean | nucleus | 68.12 | 52.52 |
| PGSC0003DMT400016521 | Potato | nucleus | 66.48 | 52.36 |
| Solyc09g082580.2.1 | Tomato | cytosol | 66.21 | 52.26 |
| Os12t0604200-00 | Rice | nucleus | 52.32 | 51.75 |
| Zm00001d030661_P001 | Maize | cytosol | 65.12 | 51.73 |
| Bra036892.1-P | Field mustard | nucleus | 65.12 | 51.07 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 65.12 | 50.96 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 65.4 | 50.96 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.31 | 50.75 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 64.85 | 50.64 |
| Bra039719.1-P | Field mustard | nucleus | 63.76 | 50.32 |
| KRH31661 | Soybean | nucleus | 65.94 | 50.1 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 57.49 | 49.65 |
| KRH69115 | Soybean | nucleus | 65.67 | 49.59 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 63.76 | 49.26 |
| AT5G43870.1 | Thale cress | plastid | 60.76 | 49.23 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 64.03 | 49.16 |
| CDY29764 | Canola | nucleus | 59.13 | 48.98 |
| CDX94730 | Canola | cytosol | 59.67 | 48.78 |
| CDY22328 | Canola | plastid | 59.67 | 48.56 |
| CDY14898 | Canola | cytosol | 59.13 | 48.12 |
| Bra036001.1-P | Field mustard | nucleus | 59.13 | 48.12 |
| AT3G22810.1 | Thale cress | cytosol | 61.58 | 47.88 |
| KRH67258 | Soybean | nucleus | 49.59 | 47.64 |
| Solyc09g065590.2.1 | Tomato | plastid | 62.4 | 47.02 |
| PGSC0003DMT400049811 | Potato | plastid | 61.85 | 47.0 |
| KRG95576 | Soybean | nucleus | 61.85 | 46.8 |
| KRH32056 | Soybean | nucleus | 61.04 | 46.57 |
| CDX93914 | Canola | nucleus | 62.13 | 46.44 |
| KRH71381 | Soybean | nucleus | 60.76 | 46.36 |
| Bra040444.1-P | Field mustard | plastid | 61.04 | 46.09 |
| AT3G63300.1 | Thale cress | plastid | 62.4 | 45.98 |
| CDY53717 | Canola | nucleus | 61.31 | 45.82 |
| Bra023803.1-P | Field mustard | cytosol | 56.95 | 45.43 |
| CDX96925 | Canola | plastid | 58.31 | 43.67 |
| CDY46598 | Canola | mitochondrion | 56.68 | 43.06 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 30.79 | 33.73 |
| GSMUA_Achr10P... | Banana | nucleus | 35.15 | 32.09 |
| CDY36869 | Canola | nucleus, plastid | 14.44 | 30.46 |
| GSMUA_Achr11P... | Banana | nucleus | 32.43 | 30.05 |
| GSMUA_Achr4P02070_001 | Banana | cytosol | 26.7 | 25.26 |
| GSMUA_Achr10P... | Banana | cytosol | 25.07 | 23.83 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 0.54 | 2.06 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P21170_001 | EnsemblPlants:GSMUA_Achr4T21170_001 | EnsemblPlantsGene:GSMUA_Achr4G21170_001 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 |
| PANTHER:PTHR31351:SF4 | PFAM:PF05703 | PFAM:PF08458 | SEG:seg | UniParc:UPI00029551C0 | UniProt:M0SQT0 |
| MapMan:35.1 | : | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G21170_001]
Coordinates
chr4:-:21670029..21672086
Molecular Weight (calculated)
38471.4 Da
IEP (calculated)
7.939
GRAVY (calculated)
-0.210
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEAGHPWRT EIPRPPELPR DPMEFLSRSW SASAFEVSRA LTPLPPPAAA IPEDAAGELE ELGAAAAAVA GNTFSFASSA TSQLVMERIM SQSEVSPLTS
101: GRLSHSSGPL NGGGSLSDSP PVSPCHMDDV KFWGAADARK PQPCRGTSKT VGRWLKDRRE RKKEESRAQN AQLHAAVSVA GVAAAVAAIA AATASASGSG
201: KDDRAARTDV AVASAATLVA AQCVEVAEIM GAEREHLASV ISSAVSVRTP GDVVALTAAA ATALRGAATL KARALKEVWN IAAVIPVEKG GAANNNHHRR
301: RMQEKELDSN SSSVSGELVA EENFLGLCCQ ELLARGTELL KRTRKGALHW KIVSVYVNKM DQASRSS
101: GRLSHSSGPL NGGGSLSDSP PVSPCHMDDV KFWGAADARK PQPCRGTSKT VGRWLKDRRE RKKEESRAQN AQLHAAVSVA GVAAAVAAIA AATASASGSG
201: KDDRAARTDV AVASAATLVA AQCVEVAEIM GAEREHLASV ISSAVSVRTP GDVVALTAAA ATALRGAATL KARALKEVWN IAAVIPVEKG GAANNNHHRR
301: RMQEKELDSN SSSVSGELVA EENFLGLCCQ ELLARGTELL KRTRKGALHW KIVSVYVNKM DQASRSS
001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKSK
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKSK
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.