Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036892.1-P | Field mustard | nucleus | 92.42 | 93.8 |
| CDY29764 | Canola | nucleus | 87.37 | 93.68 |
| CDY16256 | Canola | cytosol | 76.63 | 91.0 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 89.05 | 90.97 |
| Bra039719.1-P | Field mustard | nucleus | 88.42 | 90.32 |
| CDY36869 | Canola | nucleus, plastid | 32.63 | 89.08 |
| CDY36868 | Canola | nucleus | 42.11 | 86.96 |
| AT3G22810.1 | Thale cress | cytosol | 81.05 | 81.57 |
| KRG91356 | Soybean | cytosol | 73.26 | 73.11 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 70.53 | 72.67 |
| KRH35470 | Soybean | nucleus | 72.63 | 72.48 |
| PGSC0003DMT400016521 | Potato | nucleus | 69.47 | 70.82 |
| Solyc09g082580.2.1 | Tomato | cytosol | 69.05 | 70.54 |
| KRH31661 | Soybean | nucleus | 71.16 | 69.98 |
| KRH69115 | Soybean | nucleus | 71.37 | 69.75 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 61.89 | 64.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.68 | 64.54 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 60.21 | 64.27 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 49.26 | 63.76 |
| AT5G43870.1 | Thale cress | plastid | 60.42 | 63.36 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 59.16 | 61.22 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 59.37 | 60.78 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 59.16 | 60.69 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 59.16 | 60.56 |
| KXG37970 | Sorghum | cytosol | 58.95 | 59.45 |
| Zm00001d033283_P001 | Maize | cytosol | 58.95 | 59.32 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 58.53 | 59.28 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 56.84 | 57.32 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 56.63 | 57.23 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 56.42 | 57.14 |
| AT3G63300.1 | Thale cress | plastid | 59.58 | 56.83 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 58.32 | 56.76 |
| Zm00001d030661_P001 | Maize | cytosol | 55.16 | 56.71 |
| Os03t0635800-01 | Rice | nucleus | 45.05 | 56.61 |
| Os12t0604200-00 | Rice | nucleus | 43.79 | 56.06 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 10.74 | 52.58 |
| AT4G32780.2 | Thale cress | cytosol | 33.26 | 37.09 |
| AT4G17350.1 | Thale cress | cytosol | 29.26 | 34.32 |
| AT5G47440.1 | Thale cress | nucleus | 27.79 | 32.51 |
| AT4G16670.1 | Thale cress | cytosol | 26.95 | 29.84 |
| AT5G57770.1 | Thale cress | cytosol | 24.42 | 28.57 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827127 | ProteinID:AEE83490.1 | ProteinID:AEE83491.1 | ArrayExpress:AT4G14740 | EnsemblPlantsGene:AT4G14740 |
| RefSeq:AT4G14740 | TAIR:AT4G14740 | RefSeq:AT4G14740-TAIR-G | EnsemblPlants:AT4G14740.1 | TAIR:AT4G14740.1 | EMBL:AY074274 |
| EMBL:AY150455 | InterPro:DUF828 | RefSeq:NP_193210.2 | RefSeq:NP_974549.1 | PFAM:PF05703 | PFAM:PF08458 |
| InterPro:PH_pln | PO:PO:0000005 | PO:PO:0000293 | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF16 | UniProt:Q8VY20 |
| UniParc:UPI00000ABF7A | SEG:seg | : | : | : | : |
Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
Coordinates
chr4:-:8450158..8454159
Molecular Weight (calculated)
51387.1 Da
IEP (calculated)
8.366
GRAVY (calculated)
-0.356
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.