Factsheet for VIT_05s0020g04020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91356	Soybean	cytosol	83.3	80.67
KRH35470	Soybean	nucleus	82.86	80.25
Solyc09g082580.2.1	Tomato	cytosol	78.96	78.28
PGSC0003DMT400016521	Potato	nucleus	78.96	78.11
KRH69115	Soybean	nucleus	80.04	75.93
KRH31661	Soybean	nucleus	79.18	75.57
Bra036892.1-P	Field mustard	nucleus	73.32	72.22
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	72.23	71.61
Bra039719.1-P	Field mustard	nucleus	72.02	71.4
CDY29764	Canola	nucleus	68.55	71.33
CDY36869	Canola	nucleus, plastid	26.9	71.26
AT3G22810.1	Thale cress	cytosol	72.23	70.55
AT4G14740.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	72.67	70.53
CDY16256	Canola	cytosol	60.74	70.0
VIT_07s0151g00290.t01	Wine grape	nucleus	72.45	69.87
GSMUA_Achr5P02990_001	Banana	nucleus	68.76	69.82
Bra033702.1-P	Field mustard	cytosol, plastid	63.56	68.94
Bra023803.1-P	Field mustard	cytosol	67.9	68.04
GSMUA_Achr7P07730_001	Banana	nucleus	65.51	67.87
GSMUA_AchrUn_...	Banana	nucleus	66.59	67.62
CDY22328	Canola	plastid	65.51	66.96
GSMUA_Achr4P21170_001	Banana	cytosol	52.93	66.48
CDX94730	Canola	cytosol	64.21	65.92
AT5G43870.1	Thale cress	plastid	64.43	65.56
TraesCS5A01G377600.1	Wheat	nucleus	64.64	64.92
HORVU5Hr1G093460.2	Barley	nucleus	65.29	64.87
CDY46598	Canola	mitochondrion	67.68	64.6
CDY14898	Canola	cytosol	63.12	64.52
TraesCS5D01G387600.1	Wheat	nucleus	64.64	64.36
KXG37970	Sorghum	cytosol	65.73	64.33
Bra036001.1-P	Field mustard	nucleus	62.91	64.3
TraesCS5B01G381200.1	Wheat	nucleus	64.64	64.22
Zm00001d033283_P001	Maize	cytosol	65.73	64.19
Zm00001d013705_P001	Maize	cytosol, nucleus, peroxisome	65.08	63.97
TraesCS5A01G056700.2	Wheat	nucleus	63.34	62.0
TraesCS5D01G067900.2	Wheat	nucleus	63.12	61.91
GSMUA_Achr4P21160_001	Banana	cytosol	13.02	61.86
TraesCS5B01G060100.2	Wheat	nucleus	62.91	61.83
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	65.08	61.48
Zm00001d030661_P001	Maize	cytosol	61.17	61.04
CDY36868	Canola	nucleus	30.15	60.43
Os03t0635800-01	Rice	nucleus	49.24	60.05
Os12t0604200-00	Rice	nucleus	47.51	59.03
CDX96925	Canola	plastid	62.47	58.78
VIT_04s0008g03570.t01	Wine grape	cytosol, nucleus, plastid	38.61	41.98
VIT_11s0037g01110.t01	Wine grape	cytosol	26.46	32.45
VIT_11s0037g01240.t01	Wine grape	cytosol	26.68	31.38

Protein Annotations

EntrezGene:100256307	wikigene:100256307	MapMan:35.1	ProteinID:CCB50457	ProteinID:CCB50457.1	ncoils:Coil
InterPro:DUF828	UniProt:F6HDT6	EMBL:FN595749	EntrezGene:LOC100256307	wikigene:LOC100256307	PFAM:PF05703
PFAM:PF08458	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF16	UniParc:UPI00015C7A27	ArrayExpress:VIT_05s0020g04020
EnsemblPlantsGene:VIT_05s0020g04020	EnsemblPlants:VIT_05s0020g04020.t01	RefSeq:XP_002283288	RefSeq:XP_002283288.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:5705584..5709589

Molecular Weight (calculated)

49250.7 Da

IEP (calculated)

9.567

GRAVY (calculated)

-0.314

Length

461 amino acids

Sequence
(BLAST)

001: MDKTVGDPWK SDTGLFRPPE TPREPMEFLS RSWSVSALEV SKALAPTQMQ ALSKTLSGGG GFAIPEDIAG EVEEAAISGN PFSFASSETS QLVMERIMSQ
101: SQEVSPRTSG RLSHSSGPLN GTQSCGSLTD SPPVSPSEID DLKFCRSNNP VNTQYRPATA ATTGKTVGRW LKDRKEKKKE ETRAQNAQLH ATVSVAGVAA
201: AIAAIAAATA ASSGAGKDEQ MAKTDMAVAS AATLVAAQCV EAAEAMGAER EHLASVVGSA VNVRSAGDIM TLTAAAATAL RGAATLKARA LKEVWNIAAV
301: IPVDKGMGIG GGNGSNGNSN SSYSGELVAE ENFLGICSRE LLARGCELLK RTRKGDLHWK VVSVYINRMG QVMLKMKSRH VAGTITKKKK NVVLEVCKDM
401: PAWPGRHLLE GGEHRRYFGL KTIQRGVIEF ECRNQREYDI WTHGVSRLLT VAGERNNRHR V

Best Arabidopsis Sequence Match ( AT3G22810.1 )
(BLAST)

001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI

Arabidopsis Description

Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.