Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G234200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 90.34 | 90.1 |
| TraesCS1A01G220700.1 | Wheat | cytosol | 89.82 | 89.58 |
| TraesCS3A01G147100.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 88.51 | 88.05 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 92.69 | 85.54 |
| Os10t0560000-01 | Rice | cytosol | 74.93 | 75.73 |
| EER94492 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 73.11 | 68.13 |
| Zm00001d000175_P001 | Maize | plastid | 69.97 | 67.51 |
| Zm00001d029886_P001 | Maize | vacuole | 68.67 | 66.41 |
| GSMUA_Achr8P11040_001 | Banana | cytosol | 50.65 | 57.91 |
| GSMUA_Achr11P... | Banana | nucleus | 55.61 | 53.79 |
| HORVU0Hr1G032140.1 | Barley | cytosol | 53.0 | 52.05 |
| HORVU0Hr1G027000.1 | Barley | cytosol | 53.0 | 52.05 |
| HORVU6Hr1G062990.1 | Barley | cytosol | 52.48 | 50.38 |
| PGSC0003DMT400012161 | Potato | nucleus | 42.82 | 42.05 |
| Solyc08g078500.2.1 | Tomato | cytosol | 42.3 | 41.54 |
| AT4G17350.1 | Thale cress | cytosol | 43.86 | 41.48 |
| CDY09634 | Canola | nucleus | 43.86 | 41.08 |
| CDY65120 | Canola | cytosol | 43.08 | 40.94 |
| Bra026246.1-P | Field mustard | nucleus | 42.82 | 40.69 |
| CDY64500 | Canola | cytosol | 42.56 | 40.45 |
| KRH28119 | Soybean | nucleus | 40.73 | 39.9 |
| KRH04152 | Soybean | nucleus | 40.21 | 39.19 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 39.43 | 38.62 |
| KRH57434 | Soybean | nucleus | 39.69 | 38.58 |
| AT5G47440.1 | Thale cress | nucleus | 40.21 | 37.93 |
| Bra024944.1-P | Field mustard | cytosol | 38.9 | 36.79 |
| CDX77767 | Canola | nucleus | 38.9 | 36.7 |
| CDY59298 | Canola | nucleus | 38.64 | 36.45 |
| CDY32269 | Canola | cytosol | 33.94 | 34.39 |
| CDY40515 | Canola | cytosol | 39.16 | 34.17 |
| Bra038497.1-P | Field mustard | nucleus | 38.12 | 33.87 |
| AT4G16670.1 | Thale cress | cytosol | 37.86 | 33.8 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 36.55 | 30.17 |
| HORVU3Hr1G031590.6 | Barley | cytosol, nucleus, plastid | 32.38 | 18.21 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G056150.4 | EnsemblPlantsGene:HORVU1Hr1G056150 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF5 |
| PFAM:PF05703 | PFAM:PF08458 | SEG:seg | SUPFAM:SSF50729 | UniParc:UPI000B4693A9 | UniProt:A0A287FQE8 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:411689874..411691537
Molecular Weight (calculated)
41140.1 Da
IEP (calculated)
9.922
GRAVY (calculated)
-0.263
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: LCGMAMERGW KAGSAFRVDV VEEEEDAAAA IPPPQTPLEP MEYLSRSWSV SASEISKILV GGKKSLNRLP LPEMPIPEAS AVLATTAIVP RHRHHVSEQP
101: TAGYRPSSMD ARRSSISGIG HHQSIGRWFQ HKDASRSKQS SKEKLRADRA HVHAMVSVVR VAAAVAAVAA ASTSSDAQAS KMAAAMAPAT ELLASHCVEA
201: ARIAGASHEQ VASAVQSAVG VRSAGDLTTL TAAAATALRG AATMKQRVQR EAARSNASVL PYEKGHSWSP DVWCKEGELL KRTRKGDLHR TKVSVYISKR
301: SQVMLKLKSK HIGGALSKNN KSVVYGVYSE LPTWVIEPGK AFMDEKCCFG LSTAQGIVEF ECQDGASKQN WVDDVQNLLR QVA
101: TAGYRPSSMD ARRSSISGIG HHQSIGRWFQ HKDASRSKQS SKEKLRADRA HVHAMVSVVR VAAAVAAVAA ASTSSDAQAS KMAAAMAPAT ELLASHCVEA
201: ARIAGASHEQ VASAVQSAVG VRSAGDLTTL TAAAATALRG AATMKQRVQR EAARSNASVL PYEKGHSWSP DVWCKEGELL KRTRKGDLHR TKVSVYISKR
301: SQVMLKLKSK HIGGALSKNN KSVVYGVYSE LPTWVIEPGK AFMDEKCCFG LSTAQGIVEF ECQDGASKQN WVDDVQNLLR QVA
001: MQQFCRANKN SLNSVNSQFR STAATPGPIT ATATQSKTVG RWLKDRREKK KEETRAHNAQ IHAAVSVAGV AAAVAAIAAA TAASSSCGKD EQMAKTDMAV
101: ASAATLVAAQ CVEAAEVMGA EREYLASVVS SAVNVRSAGD IMTLTAGAAT ALRGVQTLKA RAMKEVWNIA SVIPMDKGLT STGGSSNNVN GSNGSSSSSH
201: SGELVQQENF LGTCSREWLA RGCELLKRTR KGDLHWKIVS VYINKMNQVM LKMKSRHVGG TFTKKKKNIV LDVIKNVPAW PGRHLLEGGD DLRYFGLKTV
301: MRGDVEFEVK SQREYEMWTQ GVSRLLVLAA ERKFRM
101: ASAATLVAAQ CVEAAEVMGA EREYLASVVS SAVNVRSAGD IMTLTAGAAT ALRGVQTLKA RAMKEVWNIA SVIPMDKGLT STGGSSNNVN GSNGSSSSSH
201: SGELVQQENF LGTCSREWLA RGCELLKRTR KGDLHWKIVS VYINKMNQVM LKMKSRHVGG TFTKKKKNIV LDVIKNVPAW PGRHLLEGGD DLRYFGLKTV
301: MRGDVEFEVK SQREYEMWTQ GVSRLLVLAA ERKFRM
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.