Factsheet for HORVU6Hr1G059210.10

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G213800.1	Wheat	cytosol	90.82	84.27
TraesCS6B01G259800.1	Wheat	cytosol	90.82	83.83
TraesCS6A01G221400.1	Wheat	cytosol	90.11	83.62
Os02t0632500-01	Rice	cytosol, plasma membrane	80.37	74.87
OQU85359	Sorghum	cytosol, mitochondrion, plastid	79.24	66.87
Zm00001d051187_P009	Maize	plastid	66.1	66.38
GSMUA_Achr1P01960_001	Banana	cytosol	59.75	54.02
PGSC0003DMT400076862	Potato	cytosol	9.32	51.16
KRH29237	Soybean	cytosol	52.12	47.55
KRH24228	Soybean	cytosol	51.98	47.42
Solyc04g008660.2.1	Tomato	cytosol	52.12	47.25
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	47.6	47.07
CDY19326	Canola	cytosol	50.0	46.03
CDY40502	Canola	cytosol	49.58	46.0
CDX97917	Canola	cytosol	49.86	45.9
Bra019896.1-P	Field mustard	cytosol	49.86	45.84
AT1G60860.1	Thale cress	cytosol	49.72	45.36
Bra027124.1-P	Field mustard	cytosol	48.45	45.07
CDY54764	Canola	cytosol	48.45	45.01
AT1G10870.2	Thale cress	cytosol	49.58	45.0
PGSC0003DMT400008126	Potato	cytosol	12.85	42.52
HORVU7Hr1G055220.21	Barley	cytosol	45.9	39.11
HORVU5Hr1G077570.15	Barley	cytosol	44.92	37.99
PGSC0003DMT400013119	Potato	cytosol	10.59	36.06
HORVU1Hr1G047800.23	Barley	plastid	5.93	12.43
HORVU5Hr1G123590.1	Barley	cytosol	6.78	9.86
HORVU4Hr1G059060.2	Barley	mitochondrion	6.64	8.16

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.3.4.1	Gene3D:3.30.40.160	UniProt:A0A287UBM3	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:HORVU6Hr1G059210
EnsemblPlants:HORVU6Hr1G059210.10	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR004148	InterPro:IPR027267	InterPro:IPR038508
PFAM:PF00169	PFAM:PF01412	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF244	SMART:SM00105	SMART:SM00233	SMART:SM00721
SUPFAM:SSF103657	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI000B488C9B	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:-:391467321..391502810

Molecular Weight (calculated)

79945.8 Da

IEP (calculated)

6.823

GRAVY (calculated)

-0.521

Length

708 amino acids

Sequence
(BLAST)

001: LLHRPTKENS STRQRDSNCP TALLFHLPPT PRSPGASREQ PRPHSRTDMA AFTKLEDSPM FRKQVTSLEQ LTDELKQRCS NLHKGCKKFM GSLDEGYAGD
101: LLFADALEAF GAGRDDPVSV AIGGPVMSKF TTAFRELGTY KELLRSQVEH MLSERLTQFI NEDLHDAKDC RQRLDRATMG YDQAREKFVS VRKGTRAEVV
201: TGLEEDLHNG KSAFERCRFN LVHALANIEA KKKYEFLESI SAVMDAHLRY FKQGFELLSQ MEPFIHQVLT YAQQSKEMAM NEQDKLAKRI QEFRTQEEIS
301: NLRMASNVNT STSGDGIHVV GLQSYKKIEA LMQSTANGQV EIIKQSYLFK RSENLRGEWK RRYFVLDSHG TLYYYGNKGK QGVASQQTAE PTGVFSRFRF
401: LNQKASSQGD DSLSCRTINL RTSTIKMDAE ENDLRFCFRV ITPMKAYTLQ QAETEADQKD WIEKITGVIA SLLNSPFPHQ PPYGNLAVER HGSASSLDSA
501: ASLEESKSSE AHSDAINHLR NIPGNDSCAE CRSPDPDWAS LNLGILICIE CSGAHRNLGV HISKVRSLRL DVKIWEPVII DLFRALGNDY NNSIWEALLP
601: KEDQGMDESN SAILFMEKPK PTDAFSIKER FIQSKYVDKL LIAKDANQIT IGILDAIRTN DVRAVYRILV LADASPNMTY DDLNNDVNHV LPVTDRKLFD
701: PASCEKIE

Best Arabidopsis Sequence Match ( AT1G60860.1 )
(BLAST)

001: MAGFINLEDS PMFQKQVFSL EGTSDELKDR CQKLYKGVKK FMGALGEAST GVSAFADSLE EFGAGHDDPV SVSIGGPVIS KFINTLRELS SYKEFLRSQV
101: EHVLLERLTN FMTVDLQEAK ESRRRFDKAV HSYDQAREKF VSLKKNTRGD IVAELEEDLE NSKSAFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDSHF
201: KYFKLGYDLL SQLEPYIHQV LTYAQQSKEQ SKIEQDRFAQ RIQEFRTQSE LDSQQASAKA DPSDVGGNHV YRAIPRKNVE ANSVSTADKE VTKQGYLLKR
301: SASLRADWKR RFFVLDNHGS LYYYRNTGNK SAKSQHYYSG LGEHSSGVFG RFRTRHNRSA SQGSLDCNMI DLRTSLIKLD AEDTDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITAAI TIRLNSHFLQ QSPARYLDKK NTSSGPATEN LTLNQKEDYN QRLNVGDDVL TILREIPGNN TCAECNAPDP DWASLNLGVL
501: MCIECSGVHR NLGVHISKVR SLTLDVKVWE PTILDLFRNL GNGYCNSVWE ELLHHLDDDS EKGSTDTLAS VSKPSSEDWF TLKEKYINGK YLEKALVVKD
601: EREANSTASS RIWEAVQSRN IRDIYRLIVK ADANIINTKF DDITDLDVYH HHHVDAPDEV KKRHDPNACQ RIKNSNEARN CLQGCSLLHV ACQSGDPILL
701: ELLLQFGADI NMRDYHGRTP LHHCIASGNN AFAKVLLRRG ARPSIEDGGG LSVLERAMEM GAITDEELFL LLAECQ

Arabidopsis Description

AGD2ADP-ribosylation factor GTPase-activating protein AGD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.