Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- endoplasmic reticulum 1
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19326 | Canola | cytosol | 90.26 | 91.55 |
| CDX97917 | Canola | cytosol | 90.26 | 91.55 |
| Bra019896.1-P | Field mustard | cytosol | 90.26 | 91.43 |
| AT1G60860.1 | Thale cress | cytosol | 79.49 | 79.9 |
| KRH29237 | Soybean | cytosol | 62.18 | 62.5 |
| KRH24228 | Soybean | cytosol | 62.18 | 62.5 |
| Solyc04g008660.2.1 | Tomato | cytosol | 59.87 | 59.8 |
| GSMUA_Achr1P01960_001 | Banana | cytosol | 55.64 | 55.43 |
| PGSC0003DMT400076862 | Potato | cytosol | 8.97 | 54.26 |
| TraesCS6A01G221400.1 | Wheat | cytosol | 53.08 | 54.26 |
| TraesCS6D01G213800.1 | Wheat | cytosol | 52.82 | 54.0 |
| Os02t0632500-01 | Rice | cytosol, plasma membrane | 52.44 | 53.82 |
| TraesCS6B01G259800.1 | Wheat | cytosol | 52.82 | 53.72 |
| Zm00001d051188_P001 | Maize | cytosol | 8.72 | 51.52 |
| VIT_01s0010g01480.t01 | Wine grape | endoplasmic reticulum, extracellular | 46.41 | 50.56 |
| OQU85359 | Sorghum | cytosol, mitochondrion, plastid | 53.97 | 50.18 |
| HORVU6Hr1G059210.10 | Barley | cytosol, plastid | 45.0 | 49.58 |
| PGSC0003DMT400008126 | Potato | cytosol | 13.46 | 49.07 |
| Zm00001d051187_P009 | Maize | plastid | 42.69 | 47.23 |
| PGSC0003DMT400013119 | Potato | cytosol | 12.31 | 46.15 |
| AT5G13300.1 | Thale cress | cytosol | 45.13 | 42.56 |
| AT5G61980.1 | Thale cress | cytosol | 42.18 | 39.73 |
| AT3G17660.2 | Thale cress | nucleus | 7.56 | 23.98 |
| AT5G54310.1 | Thale cress | cytosol | 9.74 | 15.73 |
| AT5G46750.1 | Thale cress | cytosol | 8.08 | 15.67 |
| AT4G17890.1 | Thale cress | cytosol | 7.69 | 14.53 |
| AT2G35210.1 | Thale cress | cytosol | 6.79 | 13.42 |
| AT2G37550.1 | Thale cress | mitochondrion | 7.18 | 12.28 |
| AT3G53710.2 | Thale cress | cytosol | 6.79 | 11.55 |
Protein Annotations
| Gene3D:1.20.1270.60 | Gene3D:1.25.40.20 | Gene3D:2.30.29.30 | MapMan:22.3.4.1 | Gene3D:3.30.40.160 | EntrezGene:837629 |
| UniProt:A0A1P8AMD8 | InterPro:AGD1/2/3/4_BAR_plant | Symbol:AGD4 | InterPro:AH/BAR_dom_sf | ProteinID:ANM57831.1 | InterPro:ARFGAP/RecO |
| ArrayExpress:AT1G10870 | EnsemblPlantsGene:AT1G10870 | RefSeq:AT1G10870 | TAIR:AT1G10870 | RefSeq:AT1G10870-TAIR-G | EnsemblPlants:AT1G10870.2 |
| InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:ArfGAP_dom | InterPro:ArfGAP_dom_sf | Unigene:At.23871 |
| InterPro:BAR_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005096 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0030234 |
| GO:GO:0043547 | GO:GO:0046872 | InterPro:IPR001164 | InterPro:IPR001849 | InterPro:IPR002110 | InterPro:IPR004148 |
| InterPro:IPR011993 | InterPro:IPR020683 | InterPro:IPR027267 | InterPro:IPR036770 | InterPro:IPR038508 | RefSeq:NP_001320312.1 |
| PFAM:PF00169 | PFAM:PF01412 | PFAM:PF12796 | PFAM:PF16746 | InterPro:PH-like_dom_sf | InterPro:PH_domain |
| PRINTS:PR00405 | PFscan:PS50003 | PFscan:PS50088 | PFscan:PS50115 | PFscan:PS50297 | PANTHER:PTHR23180 |
| PANTHER:PTHR23180:SF244 | SMART:SM00105 | SMART:SM00233 | SMART:SM00248 | SMART:SM00721 | SUPFAM:SSF103657 |
| SUPFAM:SSF48403 | SUPFAM:SSF50729 | SUPFAM:SSF57863 | UniParc:UPI000848962E | SEG:seg | : |
Description
AGD4ARF-GAP domain 4 [Source:TAIR;Acc:AT1G10870]
Coordinates
chr1:-:3616610..3623806
Molecular Weight (calculated)
87490.7 Da
IEP (calculated)
6.571
GRAVY (calculated)
-0.408
Length
780 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCV AFCSEDGSAL SHASVSKPCP EDSFSVKEKY ILGKYLEKAL
601: VIKDESEANL SAASRIWEAV QSRNIREIYR LIVTTGDVNI INTKFDDITD IDAYHHIDAA EKAVKKRHDP TVCQRIKESN EPRSCLQGCS LLHVACHIGD
701: SVLLELLLQF GADLNIRDYH GRTPLHHCIS SGNHKFAKIL LRRGARPSIE DDGGLSVLER AMEMGAITDE ELFLLLAECA
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCV AFCSEDGSAL SHASVSKPCP EDSFSVKEKY ILGKYLEKAL
601: VIKDESEANL SAASRIWEAV QSRNIREIYR LIVTTGDVNI INTKFDDITD IDAYHHIDAA EKAVKKRHDP TVCQRIKESN EPRSCLQGCS LLHVACHIGD
701: SVLLELLLQF GADLNIRDYH GRTPLHHCIS SGNHKFAKIL LRRGARPSIE DDGGLSVLER AMEMGAITDE ELFLLLAECA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.