Factsheet for GSMUA_Achr1P18350_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P04880_001
GSMUA_Achr1P18350_001	plasma membrane
GSMUA_Achr2P21630_001
GSMUA_Achr3P01090_001	plasma membrane
GSMUA_Achr4P20040_001	plasma membrane
GSMUA_Achr7P05530_001	plasma membrane
GSMUA_Achr7P11190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	GSMUA_Achr1P18350_001	AT1G10290.1	25462567
AT1G10290.1	GSMUA_Achr3P01090_001	AT1G10290.1	25462567
AT1G10290.1	GSMUA_Achr4P20040_001	AT1G10290.1	25462567
AT1G10290.1	GSMUA_Achr7P05530_001	AT1G10290.1	25462567
AT1G10290.1	GSMUA_Achr1P18350_001	AT1G59610.1	25462567
AT1G10290.1	GSMUA_Achr3P01090_001	AT1G59610.1	25462567
AT1G10290.1	GSMUA_Achr4P20040_001	AT1G59610.1	25462567
AT1G10290.1	GSMUA_Achr7P05530_001	AT1G59610.1	25462567
AT1G10290.1	GSMUA_Achr1P18350_001	AT1G59610.1	25462567
AT1G10290.1	GSMUA_Achr3P01090_001	AT1G59610.1	25462567
AT1G10290.1	GSMUA_Achr4P20040_001	AT1G59610.1	25462567
AT1G10290.1	GSMUA_Achr7P05530_001	AT1G59610.1	25462567
AT1G59610.1	GSMUA_Achr2P21630_001	AT1G14830.1	21798944
AT1G59610.1	GSMUA_Achr7P11190_001	AT1G14830.1	21798944
AT1G59610.1	GSMUA_Achr1P18350_001	AT1G59610.1	25462567
AT1G59610.1	GSMUA_Achr3P01090_001	AT1G59610.1	25462567
AT1G59610.1	GSMUA_Achr4P20040_001	AT1G59610.1	25462567
AT1G59610.1	GSMUA_Achr7P05530_001	AT1G59610.1	25462567
AT1G59610.1	GSMUA_Achr1P04880_001	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05530_001	Banana	nucleus	91.61	88.93
GSMUA_Achr4P20040_001	Banana	cytosol	90.72	88.25
GSMUA_Achr3P01090_001	Banana	nucleus	88.03	85.73
VIT_12s0035g01740.t01	Wine grape	cytosol	82.55	80.22
VIT_18s0089g00350.t01	Wine grape	cytosol	83.22	79.91
CDX94910	Canola	cytosol	41.72	78.53
KRH27552	Soybean	cytosol	80.87	78.42
KRH36411	Soybean	endoplasmic reticulum, nucleus	80.65	78.2
CDY31035	Canola	cytosol	54.59	77.96
KRH51295	Soybean	endoplasmic reticulum	78.41	76.7
CDY20643	Canola	cytosol	54.14	76.46
KRH01870	Soybean	endoplasmic reticulum	77.96	76.26
Zm00001d037279_P005	Maize	plasma membrane	77.29	75.68
EES05560	Sorghum	nucleus	77.85	75.57
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	77.52	75.41
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	76.96	75.36
VIT_15s0107g00170.t01	Wine grape	cytosol	19.69	74.89
Zm00001d017979_P002	Maize	extracellular, mitochondrion	77.07	74.81
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	76.29	74.7
AT1G10290.1	Thale cress	cytosol	76.17	74.51
AT1G59610.1	Thale cress	cytosol	76.51	74.35
Os02t0738900-01	Rice	plasma membrane	76.62	74.21
TraesCS6D01G291700.1	Wheat	nucleus	74.94	74.2
TraesCS7D01G200900.1	Wheat	golgi, unclear	74.72	73.98
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	74.61	73.86
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	74.5	73.84
CDX93442	Canola	cytosol	75.17	73.77
CDY04455	Canola	cytosol	75.73	73.75
TraesCS6A01G312300.3	Wheat	nucleus	75.06	73.74
CDY45889	Canola	cytosol	75.84	73.7
Solyc01g103130.1.1	Tomato	nucleus, unclear	50.0	73.64
Os06t0247800-01	Rice	plasma membrane	74.94	73.55
TraesCS7B01G104500.1	Wheat	golgi, unclear	74.27	73.53
Bra018449.1-P	Field mustard	cytosol	74.72	73.17
CDY34897	Canola	cytosol	74.83	73.11
Bra031707.1-P	Field mustard	cytosol	74.83	73.11
VIT_00s0267g00020.t01	Wine grape	cytosol	12.75	72.61
CDX94909	Canola	mitochondrion	58.61	72.08
Bra017901.1-P	Field mustard	cytosol	76.17	72.06
VIT_02s0087g00010.t01	Wine grape	cytosol	14.99	72.04
CDY27283	Canola	cytosol	61.41	71.95
Bra019950.1-P	Field mustard	cytosol	75.17	71.57
Os08t0425100-01	Rice	plasma membrane	60.96	71.15
KXG25176	Sorghum	cytosol	59.51	70.74
CDY44550	Canola	cytosol	75.95	70.44
VIT_03s0038g00540.t01	Wine grape	cytosol	13.76	69.89
VIT_03s0110g00120.t01	Wine grape	cytosol	19.24	69.64
TraesCS6B01G342500.2	Wheat	cytosol	71.7	69.45
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	75.28	69.31
Bra035433.1-P	Field mustard	cytosol	76.06	67.93
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	19.69	66.42
Solyc01g103120.2.1	Tomato	cytosol	21.25	64.41
Zm00001d032256_P001	Maize	cytosol	62.64	60.22
Zm00001d051815_P002	Maize	cytosol	33.45	54.46
GSMUA_Achr11P...	Banana	cytosol	20.47	29.8
GSMUA_Achr2P21630_001	Banana	cytosol	20.25	29.72
GSMUA_Achr7P11190_001	Banana	cytosol	20.25	29.58
GSMUA_Achr2P18210_001	Banana	cytosol	20.13	29.46
GSMUA_AchrUn_...	Banana	cytosol	20.36	28.93
GSMUA_Achr6P26600_001	Banana	cytosol	19.13	28.08
GSMUA_Achr1P04880_001	Banana	cytosol	18.79	27.54
GSMUA_Achr8P27540_001	Banana	cytosol	18.46	27.09
GSMUA_Achr10P...	Banana	cytosol	15.88	18.14
GSMUA_Achr8P08760_001	Banana	cytosol	14.54	16.88
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	10.18	16.34
GSMUA_Achr10P...	Banana	cytosol	9.62	12.67
GSMUA_Achr2P09480_001	Banana	plastid	11.07	12.1
HORVU4Hr1G074040.2	Barley	nucleus	2.46	8.59
HORVU5Hr1G092990.14	Barley	cytosol	2.46	8.3
HORVU4Hr1G073960.12	Barley	cytosol	3.58	8.02

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr1G18350_001	EnsemblPlants:GSMUA_Achr1P18350_001	EnsemblPlants:GSMUA_Achr1T18350_001	InterPro:G_DYNAMIN_dom	InterPro:IPR001849	InterPro:IPR011993
InterPro:IPR020850	InterPro:IPR030381	UniProt:M0S0Z3	InterPro:P-loop_NTPase	PFAM:PF00169	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF57	SMART:SM00053
SMART:SM00233	SMART:SM00302	SUPFAM:SSF50729	SUPFAM:SSF52540	UniParc:UPI000295CF21	SEG:seg

Description

Dynamin-2B [Source:GMGC_GENE;Acc:GSMUA_Achr1G18350_001]

Coordinates

chr1:+:13709365..13721966

Molecular Weight (calculated)

97396.0 Da

IEP (calculated)

9.692

GRAVY (calculated)

-0.443

Length

894 amino acids

Sequence
(BLAST)

001: MEAMEDLSQL AESMMQAAAL LADEDVDEGS AKRRTSTFLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPISIDL QRDGSLSNKL IILQVDNKSQ
101: QVSASALRHS LQDRLSKGTG KSHADEIYMK LRTSTAPSLK LIDLPGLDQR SMDDSRVSDY GAHNDAILLV IVPAAQAPDI SSSRALRLAK EFDAEGTRTI
201: GVISKIDQAA GDQKSLAAVQ ALLLNQGPRS AADIPWIALI GQSVSIASAQ SGSVGSESSL ETAWRAETES LKTILTGAPQ NKLGRVALVD ALAKQIRKRM
301: KLRLPNLLSG LQGKSQIVQD ELFRLGEQMV QSAEGTRAIA LELCREFEDK FLQHIATGEG AGWKVVATFE GTFPNRIKQL PLDRHFDINN VKRIVLEADG
401: YQPYLISPEK GLRSLIKGVL ELAKEPSRLC VDEVHRVLLD IVSTSANATP GLGRYPPFKR EVVAIASTAL ENFRNEAKKM VVALVDMERA FVPPQHFIRL
501: VQRRMDRQRR EEELKNRSSK KANEAEQAIL NRASSPQPGD QGGSLKSMKE KSNQPEKETK EGSALQVAGP SGEITAGFLL KKSAKTNGWS RRWFVLNEKS
601: GKLGYTKKQE ERHFRGVITL EECNLEEISD EDDPPKSSKD SKKAKGPEKG PSLIFKLTSK VAYKTVLKAH SAVVLKAENI ADKVEWMNKI RNITGPSKGV
701: PDSVATPTIR QSRSDGSLDT MARRPADPEE ELRWMSQEVR GYVEAVLNSL AANVPKAVVL CQVEKAKEDM LNQLYSSVSA QSTARIEELL QEDQNVKRRR
801: ERIQRQSSIL SKLTRQLSIH DNQAAAASWS DGSSVTESSP RANVSSGDDW RSAFDAAANG SVDGSGANSG SRRTPNRLPP APPQGNAIAI LYMA

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.