Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0335000-00 | Rice | cytosol, nucleus | 38.93 | 79.56 |
| KRH69386 | Soybean | cytosol | 25.47 | 72.62 |
| Bra040328.1-P | Field mustard | cytosol, mitochondrion | 20.0 | 70.09 |
| CDY37024 | Canola | cytosol, mitochondrion | 29.6 | 68.52 |
| Zm00001d049980_P001 | Maize | plasma membrane | 63.33 | 68.05 |
| KRH12910 | Soybean | cytosol, nucleus | 66.0 | 66.44 |
| Solyc03g115390.2.1 | Tomato | nucleus | 79.6 | 65.68 |
| PGSC0003DMT400005723 | Potato | nucleus | 68.27 | 62.29 |
| AT4G16680.2 | Thale cress | nucleus | 61.47 | 57.91 |
| KRH54662 | Soybean | nucleus | 80.53 | 57.74 |
| KXG30390 | Sorghum | nucleus | 80.4 | 57.65 |
| VIT_17s0000g06950.t01 | Wine grape | nucleus | 80.67 | 57.4 |
| EES02741 | Sorghum | nucleus | 79.87 | 57.27 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 79.47 | 56.98 |
| PGSC0003DMT400063370 | Potato | nucleus | 79.73 | 56.95 |
| Solyc12g017700.1.1 | Tomato | nucleus | 67.2 | 56.88 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 79.2 | 56.79 |
| Bra010168.1-P | Field mustard | nucleus | 76.13 | 54.69 |
| CDY26898 | Canola | nucleus | 76.0 | 54.6 |
| CDY32278 | Canola | endoplasmic reticulum | 75.73 | 54.41 |
| KRH40933 | Soybean | cytosol | 44.13 | 54.35 |
| KRH74752 | Soybean | nucleus | 74.4 | 54.07 |
| AT1G32490.1 | Thale cress | cytosol | 75.07 | 53.93 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 76.0 | 52.78 |
| AT2G35340.1 | Thale cress | endoplasmic reticulum, nucleus | 73.33 | 52.68 |
| CDY60185 | Canola | nucleus | 59.87 | 52.27 |
| CDY40514 | Canola | nucleus | 59.07 | 51.45 |
| Bra038498.1-P | Field mustard | nucleus | 61.33 | 51.05 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 20.8 | 43.82 |
| GSMUA_Achr3P12710_001 | Banana | nucleus | 42.13 | 43.53 |
| GSMUA_Achr11P... | Banana | nucleus | 19.07 | 37.73 |
| GSMUA_Achr3P24350_001 | Banana | endoplasmic reticulum, vacuole | 33.87 | 35.72 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 29.33 | 32.79 |
| GSMUA_Achr10P... | Banana | nucleus | 38.13 | 29.33 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 38.0 | 28.05 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 12.4 | 20.44 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 28.53 | 19.91 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 28.4 | 18.28 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 13.07 | 17.75 |
| GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 26.8 | 16.07 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 22.8 | 15.19 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 26.13 | 13.77 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 20.4 | 12.42 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr4G23370_001 | EnsemblPlants:GSMUA_Achr4P23370_001 | EnsemblPlants:GSMUA_Achr4T23370_001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0SRE8 | InterPro:P-loop_NTPase | PFAM:PF04408 |
| PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF117 | SMART:SM00487 |
| SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI000295D3C9 | SEG:seg | : | : |
Description
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Source:GMGC_GENE;Acc:GSMUA_Achr4G23370_001]
Coordinates
chr4:-:23480253..23491011
Molecular Weight (calculated)
85286.9 Da
IEP (calculated)
6.075
GRAVY (calculated)
-0.455
Length
750 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNRMLSSVK CLERHFYIGP PVSLWDLYKK KIYELASEHL EDVDNINEYR MPEAYDHEGG VNQERRFAAA MLRYRDAGAG DKMDPFAEQE EWENYQSGKA
101: NLKYGSKDKK QASADYQYVF EDGVDFIKES IMDGVNYKDE MPSEDPDDSI AKTALHKLKE ERKTLPIYPY REQLLQAVQD HQVLVIVGET GSGKTTQIPQ
201: YLHEAGYTKR GQVGCTQPRR VAAMSVAARV SQEMGVKLGH EVGYSIRFED CTSEKTIMKY MTDGMLLREF LSEPDLASYS VIMVDEAHER TLSTDILFGL
301: VKDISRFRKD LKLLISSATL DAEKFSDYFD SAPIFKIPGR RYPVEIHFTT APEADYIDAA IVTVLQIHVT QPPGDILVFL TGQEEIETID EILKHRTRGL
401: GTKIAELIIC PIYANLPTEL QAKIFEPTPE VNPISKASAM QRAGRSGRTG PGKCFRLYTA YNFQNDLDDN AVPEIQRTNL ANVVLTLKSL GINDLVNFDF
501: MDPPPSEALL KALEQLYALN ALNSRGELTK TGRRMAEFPL DPMLSKMIVA SEKYKCSEEV ISISSMLSVG NSIFYRPKDK QVHADNARMN FHTGNVGDHI
601: ALLNVYNSWK ETNYSTQWCY ENYIQVRSMK RARDIRDQLE GLLERVEIEP TSNLSDLDAV KKAITSGFFH HSAKLQKTGA YKTVKNPQTV LPRWVIYHEL
701: VLTTKEYMRQ VIELKPEWLI EIAPHFYQMK DVEDAAATKK LPRGKGRAAD
101: NLKYGSKDKK QASADYQYVF EDGVDFIKES IMDGVNYKDE MPSEDPDDSI AKTALHKLKE ERKTLPIYPY REQLLQAVQD HQVLVIVGET GSGKTTQIPQ
201: YLHEAGYTKR GQVGCTQPRR VAAMSVAARV SQEMGVKLGH EVGYSIRFED CTSEKTIMKY MTDGMLLREF LSEPDLASYS VIMVDEAHER TLSTDILFGL
301: VKDISRFRKD LKLLISSATL DAEKFSDYFD SAPIFKIPGR RYPVEIHFTT APEADYIDAA IVTVLQIHVT QPPGDILVFL TGQEEIETID EILKHRTRGL
401: GTKIAELIIC PIYANLPTEL QAKIFEPTPE VNPISKASAM QRAGRSGRTG PGKCFRLYTA YNFQNDLDDN AVPEIQRTNL ANVVLTLKSL GINDLVNFDF
501: MDPPPSEALL KALEQLYALN ALNSRGELTK TGRRMAEFPL DPMLSKMIVA SEKYKCSEEV ISISSMLSVG NSIFYRPKDK QVHADNARMN FHTGNVGDHI
601: ALLNVYNSWK ETNYSTQWCY ENYIQVRSMK RARDIRDQLE GLLERVEIEP TSNLSDLDAV KKAITSGFFH HSAKLQKTGA YKTVKNPQTV LPRWVIYHEL
701: VLTTKEYMRQ VIELKPEWLI EIAPHFYQMK DVEDAAATKK LPRGKGRAAD
0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
Arabidopsis Description
ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.