Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P12710_001 | Banana | nucleus | 52.6 | 51.52 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 24.75 | 49.44 |
| TraesCS1B01G398100.1 | Wheat | cytosol | 34.46 | 35.56 |
| GSMUA_Achr11P... | Banana | nucleus | 18.71 | 35.09 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 35.72 | 33.87 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 27.71 | 29.36 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 16.74 | 26.15 |
| GSMUA_Achr10P... | Banana | nucleus | 34.74 | 25.33 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 34.32 | 24.02 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 27.0 | 17.86 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 28.55 | 17.42 |
| GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 27.99 | 15.91 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 24.61 | 15.54 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 26.86 | 13.42 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 10.41 | 13.41 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 21.38 | 12.34 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.3.3 | Gene3D:3.40.50.300 | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr3G24350_001 | EnsemblPlants:GSMUA_Achr3P24350_001 | EnsemblPlants:GSMUA_Achr3T24350_001 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0SHF1 | InterPro:P-loop_NTPase |
| PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 |
| SMART:SM00487 | SMART:SM00847 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI000294AB25 | SEG:seg |
Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Source:GMGC_GENE;Acc:GSMUA_Achr3G24350_001]
Coordinates
chr3:+:24901440..24905732
Molecular Weight (calculated)
79538.7 Da
IEP (calculated)
7.777
GRAVY (calculated)
-0.016
Length
711 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPFLRRHSV EVLLGPVGVF SYCFCLWLRI VLLARDRPSE FWIVEVAMEE KEKGEAVAAN PVTGSPFSRR YHKLLERRKK LPVWGQRNKF LDALAKRRVV
101: VVAAPPGSGK STQIPQFVIE AGYASEGKQI ACTQPRCLVA TALSRRVAQE MDVKLGEEVG YSVLFEDCTG PKTILKYLTD GLLLREAMSD QFLERYTVII
201: LDEVHLRTLA TDILLAYFKN MFKTKARCDL KLVVMSTQFE AKKFRDYFKD AQIVQPLPAL HPVQIAYVKE PVRDLVEAAV EKVIHILVSE SAGDIIVFLT
301: GLEEIERCCW RLGKLILDLG DKIGPVKVVP FHSVMPVDMQ NKVFKAAPPP TRKGGPLGRR VIVSTEITES SLSIDGIVYT IDCGYTKQKV YNADLQVESL
401: LVLPISRASA QRRSGCARRS APGKCFRLYS QDFFNRVQPQ DSPEILRANL AGTVLQFRKL GFDNLLHLDL MDPPPVETVM QAVETLKCLG ALDDEGSLTH
501: LGEVMSEFPL DPQMSKTIVN SPKFCCSNEI LSIAAMLSVP NCFLRPMENL EAADEAKATF NHIHGDHLSL LNVYHAYKLS NGDSTWWCKR NFINQTVLRS
601: ADNVRGHLVS IMHKLDLTLC STDSSSSDDY DNVRKGLLVG YFMQVAHLDH SGNYSTAKGH HVVDVHPSSS LASRPALVIY NDFVLASRNF IRILTDVPLD
701: WLVEIAPFAA A
101: VVAAPPGSGK STQIPQFVIE AGYASEGKQI ACTQPRCLVA TALSRRVAQE MDVKLGEEVG YSVLFEDCTG PKTILKYLTD GLLLREAMSD QFLERYTVII
201: LDEVHLRTLA TDILLAYFKN MFKTKARCDL KLVVMSTQFE AKKFRDYFKD AQIVQPLPAL HPVQIAYVKE PVRDLVEAAV EKVIHILVSE SAGDIIVFLT
301: GLEEIERCCW RLGKLILDLG DKIGPVKVVP FHSVMPVDMQ NKVFKAAPPP TRKGGPLGRR VIVSTEITES SLSIDGIVYT IDCGYTKQKV YNADLQVESL
401: LVLPISRASA QRRSGCARRS APGKCFRLYS QDFFNRVQPQ DSPEILRANL AGTVLQFRKL GFDNLLHLDL MDPPPVETVM QAVETLKCLG ALDDEGSLTH
501: LGEVMSEFPL DPQMSKTIVN SPKFCCSNEI LSIAAMLSVP NCFLRPMENL EAADEAKATF NHIHGDHLSL LNVYHAYKLS NGDSTWWCKR NFINQTVLRS
601: ADNVRGHLVS IMHKLDLTLC STDSSSSDDY DNVRKGLLVG YFMQVAHLDH SGNYSTAKGH HVVDVHPSSS LASRPALVIY NDFVLASRNF IRILTDVPLD
701: WLVEIAPFAA A
001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.