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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400038620 Potato cytosol, nucleus, plastid 41.88 80.52
EER87951 Sorghum nucleus, plastid 66.47 63.26
Os11t0310800-01 Rice nucleus 66.62 63.14
TraesCS4D01G074200.1 Wheat nucleus 66.17 62.98
TraesCS4B01G075500.1 Wheat nucleus 66.02 62.84
Zm00001d045147_P015 Maize nucleus 65.87 62.61
TraesCS4A01G239500.2 Wheat nucleus 65.72 62.55
CDY11762 Canola nucleus 64.53 61.51
Bra010915.1-P Field mustard nucleus 64.53 61.42
CDX90112 Canola nucleus 64.53 61.42
KRH58751 Soybean nucleus 63.79 61.41
AT1G27900.1 Thale cress nucleus 63.64 61.0
VIT_01s0010g02780.t01 Wine grape nucleus 57.97 60.78
Solyc05g015040.2.1 Tomato nucleus 63.34 60.71
GSMUA_Achr1P18470_001 Banana cytosol 21.01 39.61
GSMUA_Achr11P... Banana nucleus 21.91 38.79
GSMUA_Achr3P12710_001 Banana nucleus 33.98 31.41
GSMUA_Achr4P23370_001 Banana nucleus 32.79 29.33
GSMUA_Achr3P24350_001 Banana endoplasmic reticulum, vacuole 29.36 27.71
GSMUA_Achr5P05110_001 Banana nucleus 35.92 23.72
GSMUA_Achr10P... Banana nucleus 32.49 22.36
GSMUA_Achr8P12550_001 Banana cytosol 14.16 20.88
GSMUA_Achr3P08220_001 Banana nucleus 30.4 18.98
GSMUA_Achr4P07530_001 Banana mitochondrion 29.21 16.82
GSMUA_Achr5P02110_001 Banana mitochondrion 24.89 14.83
GSMUA_Achr3P20920_001 Banana mitochondrion, nucleus 27.57 14.79
GSMUA_Achr8P12540_001 Banana nucleus 11.77 14.31
GSMUA_Achr6P17860_001 Banana nucleus 27.57 13.0
GSMUA_Achr8P17640_001 Banana nucleus 22.65 12.34
Protein Annotations
Gene3D:1.20.120.1080Gene3D:3.40.50.300MapMan:35.1InterPro:AAA+_ATPaseInterPro:DNA/RNA_helicase_DEAH_CSGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr2G20940_001EnsemblPlants:GSMUA_Achr2P20940_001EnsemblPlants:GSMUA_Achr2T20940_001InterPro:Helicase-assoc_domInterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR014001UniProt:M0S9T5InterPro:P-loop_NTPasePFAM:PF00271PFAM:PF04408
PFAM:PF13401ScanProsite:PS00690PFscan:PS51192PFscan:PS51194PANTHER:PTHR18934PANTHER:PTHR18934:SF131
SMART:SM00487SMART:SM00490SMART:SM00847SUPFAM:SSF52540UniParc:UPI000296B204SEG:seg
Description
Putative Probable ATP-dependent RNA helicase DHX37 [Source:GMGC_GENE;Acc:GSMUA_Achr2G20940_001]
Coordinates
chr2:+:20619019..20636037
Molecular Weight (calculated)
74543.3 Da
IEP (calculated)
8.496
GRAVY (calculated)
-0.089
Length
671 amino acids
Sequence
(BLAST)
001: MAVLPILQFE DKIAETVAEN PVVVIIGETG SGKSTQLSQI LHRRGYTRSG AIAVTQPRRV AAVTVARRVA FELGSRLGEE VGYAIRFEDR TSDKTCIKYL
101: TDGCLLRESL SNPELNQYSV IILDEAHERS LNTDILLGLM KRLINRRSSN LKVLITSATL DGVKVSRFFS GCPVLNVPGI LFPVEKLYST ERPTNYVECC
201: LKTALDVHVR EPPGDVLIFM TGQDDIDKMV FKLEEKIQNL EEGSCMDAIV FPLHGSLPPE LQAISSNLII CFYRGKYANV SQLLELDCTN PSLLYLGLCS
301: FSQTLNSLLV SRLSFVAFMT SKYMSQNTNI LFKNGVSHLF ILPCSSSVMK KKQMFIRVFS PAPPNCRRFI VATNIAETSL TVDGIVYVID SGFVKQRQYN
401: PSTGMYSLDI VQISRVQADQ RAGRAGRTRP GKCYRLYPRT VYDEEFLDAT IPEIQRSSLA GSVLYLKSLS LSDIDILKFD FLDPPSRESL EDALRQLYLI
501: DAIDENGQIT EIGKAMAELP LEPSLARTLI EANELGCLSQ ALTVTSMLSA EVAIRPAHSK NKEKKRKQSF SKSKLPDGSG WGDHIQLLQV YESWDRADYD
601: PNWCTDNDLQ VRSMMFSKDV RKQLSQIVQK MGKVGAATVA VVAAAARAGA ASRALRPRLA SPKRLGERLS A
Best Arabidopsis Sequence Match ( AT1G27900.2 )
(BLAST)
001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKG GCVIPNQPSL KYLVSLTN
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.