Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 41.88 | 80.52 |
EER87951 | Sorghum | nucleus, plastid | 66.47 | 63.26 |
Os11t0310800-01 | Rice | nucleus | 66.62 | 63.14 |
TraesCS4D01G074200.1 | Wheat | nucleus | 66.17 | 62.98 |
TraesCS4B01G075500.1 | Wheat | nucleus | 66.02 | 62.84 |
Zm00001d045147_P015 | Maize | nucleus | 65.87 | 62.61 |
TraesCS4A01G239500.2 | Wheat | nucleus | 65.72 | 62.55 |
CDY11762 | Canola | nucleus | 64.53 | 61.51 |
Bra010915.1-P | Field mustard | nucleus | 64.53 | 61.42 |
CDX90112 | Canola | nucleus | 64.53 | 61.42 |
KRH58751 | Soybean | nucleus | 63.79 | 61.41 |
AT1G27900.1 | Thale cress | nucleus | 63.64 | 61.0 |
VIT_01s0010g02780.t01 | Wine grape | nucleus | 57.97 | 60.78 |
Solyc05g015040.2.1 | Tomato | nucleus | 63.34 | 60.71 |
GSMUA_Achr1P18470_001 | Banana | cytosol | 21.01 | 39.61 |
GSMUA_Achr11P... | Banana | nucleus | 21.91 | 38.79 |
GSMUA_Achr3P12710_001 | Banana | nucleus | 33.98 | 31.41 |
GSMUA_Achr4P23370_001 | Banana | nucleus | 32.79 | 29.33 |
GSMUA_Achr3P24350_001 | Banana | endoplasmic reticulum, vacuole | 29.36 | 27.71 |
GSMUA_Achr5P05110_001 | Banana | nucleus | 35.92 | 23.72 |
GSMUA_Achr10P... | Banana | nucleus | 32.49 | 22.36 |
GSMUA_Achr8P12550_001 | Banana | cytosol | 14.16 | 20.88 |
GSMUA_Achr3P08220_001 | Banana | nucleus | 30.4 | 18.98 |
GSMUA_Achr4P07530_001 | Banana | mitochondrion | 29.21 | 16.82 |
GSMUA_Achr5P02110_001 | Banana | mitochondrion | 24.89 | 14.83 |
GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 27.57 | 14.79 |
GSMUA_Achr8P12540_001 | Banana | nucleus | 11.77 | 14.31 |
GSMUA_Achr6P17860_001 | Banana | nucleus | 27.57 | 13.0 |
GSMUA_Achr8P17640_001 | Banana | nucleus | 22.65 | 12.34 |
Protein Annotations
Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
EnsemblPlantsGene:GSMUA_Achr2G20940_001 | EnsemblPlants:GSMUA_Achr2P20940_001 | EnsemblPlants:GSMUA_Achr2T20940_001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0S9T5 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 |
PFAM:PF13401 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF131 |
SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI000296B204 | SEG:seg |
Description
Putative Probable ATP-dependent RNA helicase DHX37 [Source:GMGC_GENE;Acc:GSMUA_Achr2G20940_001]
Coordinates
chr2:+:20619019..20636037
Molecular Weight (calculated)
74543.3 Da
IEP (calculated)
8.496
GRAVY (calculated)
-0.089
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLPILQFE DKIAETVAEN PVVVIIGETG SGKSTQLSQI LHRRGYTRSG AIAVTQPRRV AAVTVARRVA FELGSRLGEE VGYAIRFEDR TSDKTCIKYL
101: TDGCLLRESL SNPELNQYSV IILDEAHERS LNTDILLGLM KRLINRRSSN LKVLITSATL DGVKVSRFFS GCPVLNVPGI LFPVEKLYST ERPTNYVECC
201: LKTALDVHVR EPPGDVLIFM TGQDDIDKMV FKLEEKIQNL EEGSCMDAIV FPLHGSLPPE LQAISSNLII CFYRGKYANV SQLLELDCTN PSLLYLGLCS
301: FSQTLNSLLV SRLSFVAFMT SKYMSQNTNI LFKNGVSHLF ILPCSSSVMK KKQMFIRVFS PAPPNCRRFI VATNIAETSL TVDGIVYVID SGFVKQRQYN
401: PSTGMYSLDI VQISRVQADQ RAGRAGRTRP GKCYRLYPRT VYDEEFLDAT IPEIQRSSLA GSVLYLKSLS LSDIDILKFD FLDPPSRESL EDALRQLYLI
501: DAIDENGQIT EIGKAMAELP LEPSLARTLI EANELGCLSQ ALTVTSMLSA EVAIRPAHSK NKEKKRKQSF SKSKLPDGSG WGDHIQLLQV YESWDRADYD
601: PNWCTDNDLQ VRSMMFSKDV RKQLSQIVQK MGKVGAATVA VVAAAARAGA ASRALRPRLA SPKRLGERLS A
101: TDGCLLRESL SNPELNQYSV IILDEAHERS LNTDILLGLM KRLINRRSSN LKVLITSATL DGVKVSRFFS GCPVLNVPGI LFPVEKLYST ERPTNYVECC
201: LKTALDVHVR EPPGDVLIFM TGQDDIDKMV FKLEEKIQNL EEGSCMDAIV FPLHGSLPPE LQAISSNLII CFYRGKYANV SQLLELDCTN PSLLYLGLCS
301: FSQTLNSLLV SRLSFVAFMT SKYMSQNTNI LFKNGVSHLF ILPCSSSVMK KKQMFIRVFS PAPPNCRRFI VATNIAETSL TVDGIVYVID SGFVKQRQYN
401: PSTGMYSLDI VQISRVQADQ RAGRAGRTRP GKCYRLYPRT VYDEEFLDAT IPEIQRSSLA GSVLYLKSLS LSDIDILKFD FLDPPSRESL EDALRQLYLI
501: DAIDENGQIT EIGKAMAELP LEPSLARTLI EANELGCLSQ ALTVTSMLSA EVAIRPAHSK NKEKKRKQSF SKSKLPDGSG WGDHIQLLQV YESWDRADYD
601: PNWCTDNDLQ VRSMMFSKDV RKQLSQIVQK MGKVGAATVA VVAAAARAGA ASRALRPRLA SPKRLGERLS A
001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKG GCVIPNQPSL KYLVSLTN
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKG GCVIPNQPSL KYLVSLTN
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.