Factsheet for TraesCS4D01G074200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G075500.1	Wheat	nucleus	99.15	99.15
TraesCS4A01G239500.2	Wheat	nucleus	98.58	98.58
Os11t0310800-01	Rice	nucleus	90.78	90.4
EER87951	Sorghum	nucleus, plastid	88.79	88.79
Zm00001d045147_P015	Maize	nucleus	88.51	88.39
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	38.87	78.51
VIT_01s0010g02780.t01	Wine grape	nucleus	67.38	74.22
Solyc05g015040.2.1	Tomato	nucleus	71.35	71.86
CDY11762	Canola	nucleus	71.49	71.59
Bra010915.1-P	Field mustard	nucleus	71.49	71.49
CDX90112	Canola	nucleus	71.49	71.49
KRH58751	Soybean	nucleus	70.07	70.88
AT1G27900.1	Thale cress	nucleus	70.21	70.71
GSMUA_Achr2P20940_001	Banana	nucleus	62.98	66.17
TraesCS4D01G181700.1	Wheat	cytosol	37.3	36.48
TraesCS3D01G148100.1	Wheat	nucleus	36.17	36.38
TraesCS7D01G157100.1	Wheat	plastid	35.74	35.34
TraesCS3D01G264900.1	Wheat	plastid	40.14	30.73
TraesCS4D01G362600.1	Wheat	nucleus	39.01	26.29
TraesCS7D01G341800.1	Wheat	nucleus	39.57	25.79
TraesCS1D01G243400.1	Wheat	nucleus	38.01	25.26
TraesCS4D01G147900.1	Wheat	nucleus	41.13	22.5
TraesCS1D01G148100.2	Wheat	nucleus	31.63	21.67
TraesCS2D01G231900.1	Wheat	nucleus	40.0	20.1
TraesCS5D01G397600.1	Wheat	nucleus	30.64	18.78
TraesCS6D01G279300.1	Wheat	nucleus	33.48	17.8
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	29.5	16.75
TraesCS3D01G112900.1	Wheat	nucleus	29.22	15.41
TraesCS3D01G302800.2	Wheat	plastid	26.95	14.91
TraesCS2D01G302700.1	Wheat	plastid	28.23	13.93
TraesCS5D01G087800.2	Wheat	nucleus	30.78	12.96
TraesCS2D01G171200.2	Wheat	nucleus	31.21	12.6

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF131
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4D01G074200	EnsemblPlants:TraesCS4D01G074200.1
TIGR:cd00046	TIGR:cd00079	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:+:48699917..48713222

Molecular Weight (calculated)

78546.3 Da

IEP (calculated)

8.424

GRAVY (calculated)

-0.359

Length

705 amino acids

Sequence
(BLAST)

001: MPSPSPSGPP VLPISEHEDE IVAAVEANPV IVVIGETGSG KSTQLSQILH RRGYTRRGAI AVTQPRRVAA VSVSRRVAQE LGVSIGEEVG YAIRFEDRTS
101: EKTKIKYLTD GVLLRESLSN PELKQYSVII LDEAHERSLN TDILLGLMKR LIKHRASDLK VLITSATLDG LKVSNFFSGC PVLNIPGTIF PVEKFYSTDR
201: PTNYIESSLR TAIDIHVKEA PGDVLIFMTG KDDIDKMVSK LEERIQNLEE GSCMDALVLP LHGSLPPEQQ VRVFSPAPPN CRRFIVATNV AETSLTVDGV
301: VFVVDCGYVK QRQYNPSTGM YSLDVVEISR VQADQRAGRA GRTRPGKCYR LYPSSIYQKE FLEATIPEIQ RTSLAGSVLY LKSLNLPDID ILKFDFLDPP
401: SRESLEDALR QLYLIDAIDE SGQITDVGRL MAELPLDPSL SRTLIEANEL GCLSQALTVA AVLSAEITLR QTRSKEMEGK RKRQQLPDGS GWGDHVQLLQ
501: IFESWDQADY DPRWCSDHDL QVRGMKFSKD VRNQLSQIIQ KIAKGPTDLQ ARRGRKSDPD YRKLRRALCV GYGNQLAERM IHHNGYHTVG YRTQLVQVHP
601: SSVLEGDEYG KLPVYVVYHE LINTTRPFMR NVCGVEQTWV KPILKKLEKL NINKLSGGSS ALTDSGPLEE KQPGSPTKAA AAKQSDVDSK IQAARERYLA
701: RKGKK

Best Arabidopsis Sequence Match ( AT1G27900.1 )
(BLAST)

001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.