CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	40.6	81.09
VIT_01s0010g02780.t01	Wine grape	nucleus	72.31	78.75
Bra010915.1-P	Field mustard	nucleus	77.33	76.45
CDX90112	Canola	nucleus	77.33	76.45
CDY11762	Canola	nucleus	77.19	76.42
AT1G27900.1	Thale cress	nucleus	76.33	76.0
Solyc05g015040.2.1	Tomato	nucleus	75.61	75.29
EER87951	Sorghum	nucleus, plastid	71.88	71.06
Os11t0310800-01	Rice	nucleus	72.02	70.9
Zm00001d045147_P015	Maize	nucleus	71.74	70.82
TraesCS4B01G075500.1	Wheat	nucleus	71.02	70.21
TraesCS4D01G074200.1	Wheat	nucleus	70.88	70.07
TraesCS4A01G239500.2	Wheat	nucleus	70.73	69.93
GSMUA_Achr2P20940_001	Banana	nucleus	61.41	63.79
KRH31768	Soybean	cytosol, nucleus	31.99	38.65
KRH69191	Soybean	nucleus	39.6	38.23
KRH68290	Soybean	nucleus	39.45	38.19
KRG96553	Soybean	nucleus	39.31	38.0
KRH21325	Soybean	nucleus	36.01	37.69
KRH70930	Soybean	nucleus	37.59	37.16
KRH75071	Soybean	nucleus	37.45	37.02
KRH12910	Soybean	cytosol, nucleus	36.3	33.96
KRG97372	Soybean	nucleus	42.9	30.92
KRH69386	Soybean	cytosol	11.33	30.04
KRH40933	Soybean	cytosol	24.39	27.91
KRH54662	Soybean	nucleus	41.18	27.44
KRH74752	Soybean	nucleus	39.31	26.55
KRH05918	Soybean	nucleus	43.76	25.48
KRH17401	Soybean	nucleus	43.76	25.35
KRH72171	Soybean	nucleus	32.57	25.22
KRH23170	Soybean	nucleus	41.46	22.74
KRH10165	Soybean	nucleus	41.46	22.72
KRH32860	Soybean	mitochondrion, nucleus, plastid	32.28	21.84
KRH38164	Soybean	nucleus	31.28	19.78
KRG90929	Soybean	plastid	31.85	19.49
KRH41772	Soybean	plastid	31.85	18.86
KRH60477	Soybean	plastid	31.28	18.47
KRH44757	Soybean	plastid	29.84	17.92
KRH76262	Soybean	nucleus	33.72	17.79
KRH65271	Soybean	nucleus	33.72	17.78
KRH73592	Soybean	nucleus	29.27	17.56
KRH14525	Soybean	nucleus	28.69	17.18
KRH13104	Soybean	mitochondrion	9.76	15.89
KRH01863	Soybean	nucleus	28.98	14.05
KRG97543	Soybean	nucleus, plastid	32.71	13.19
KRH31333	Soybean	nucleus, plastid	32.42	13.02

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100793583	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0K5K3	InterPro:AAA+_ATPase
EMBL:ACUP02003288	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	EnsemblPlantsGene:GLYMA_05G146100
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	EnsemblPlants:KRH58751	ProteinID:KRH58751	ProteinID:KRH58751.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF131	SMART:SM00382	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI0003DE8DED	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:33977594..33984682

Molecular Weight (calculated)

78456.8 Da

IEP (calculated)

7.568

GRAVY (calculated)

-0.299

Length

697 amino acids

Sequence
(BLAST)

001: MVSLPIVQYE EKIIETVERN PVVVVIGETG SGKSTQLSQM LHRRGYGKIA ITQPRRVAAV SVARRVAHEL GVQLGEEVGY AIRFEDRTSH STRIKYLTDG
101: VLLRESLANP ELNEYSVIIL DEAHERSLNT DILMGLMRRL VNIRSSDLKV LITSATLDGE KVSKFFADCP VLNVPGKLYP VEVLYSRERP SSYLESSLKT
201: ALDIHIREPE GDILIFMTGQ DDIEKLVSKL EDKVRALEEG SCMDAIILPL HGSLPPELQV RVFSPPPPNC RRIIVATNIA ETSLTVDGVV YVIDSGYVKQ
301: RQYNPSSGMY SLDVVQISKV QANQRAGRAG RTRPGKCYRL YPSRIYNDEF LDVTVPEIQR SSLAGSVLYL KSLDLPDIDI LKFDFLDPPS SESLQDALKQ
401: LFLIDAIDEN GAITSIGQKM AELPLEPSLA KTLMEANNYG CLYEALTVAA MLSAETTLLP GQRKTEKKRK HTISNLPDGS GLGDHIQLLQ IYECWDQTDF
501: DIGWCKDNGL QVRGMLFVRD VRKQLSQIMQ KISKGPLDVR ANGKREEFRQ DYRNLRKALC MGYANQLAER KMHHNGYRTL GFQAQVVQVH PSSVLSLDDL
601: GKFPDYVVYH ELIATPRPYM RNVCAVEMRW VIPIINKLKS LDVYKLSSGG VHHVEEEPEK KLPDFPKKDV EVASTADDRE SRIQAARERF LARKGKK

Best Arabidopsis Sequence Match ( AT1G27900.1 )
(BLAST)

001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.