CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75071	Soybean	nucleus	96.74	96.74
VIT_01s0137g00640.t01	Wine grape	nucleus	76.03	73.83
KXG22666	Sorghum	nucleus	71.91	71.91
Os06t0192500-02	Rice	mitochondrion	41.56	71.81
TraesCS7A01G156700.1	Wheat	plastid	72.06	71.25
TraesCS7D01G157100.1	Wheat	plastid	71.63	70.83
PGSC0003DMT400009842	Potato	mitochondrion	37.87	70.82
Solyc09g008120.2.1	Tomato	nucleus	71.35	70.75
TraesCS7B01G060800.1	Wheat	plastid	71.35	70.55
AT1G26370.1	Thale cress	plastid	71.06	69.87
Zm00001d011963_P002	Maize	plasma membrane	70.92	69.35
CDX85017	Canola	cytosol, plastid	70.92	69.25
CDY16154	Canola	nucleus, plastid	70.64	68.88
Bra011023.1-P	Field mustard	nucleus	67.23	68.8
CDY36075	Canola	nucleus	65.53	68.55
CDY02818	Canola	nucleus	64.26	68.22
CDY32702	Canola	nucleus	66.67	67.92
CDY34567	Canola	nucleus	63.83	67.87
Bra024720.1-P	Field mustard	nucleus	70.21	67.26
HORVU7Hr1G032080.3	Barley	plastid	71.77	61.78
GSMUA_Achr5P05110_001	Banana	nucleus	73.05	50.69
KRH68290	Soybean	nucleus	41.7	40.83
KRH69191	Soybean	nucleus	41.7	40.72
KRG96553	Soybean	nucleus	41.56	40.64
KRH31768	Soybean	cytosol, nucleus	33.05	40.38
KRH21325	Soybean	nucleus	37.73	39.94
KRH58751	Soybean	nucleus	37.16	37.59
KRH12910	Soybean	cytosol, nucleus	38.44	36.38
KRH69386	Soybean	cytosol	12.62	33.84
KRG97372	Soybean	nucleus	44.54	32.47
KRH40933	Soybean	cytosol	27.52	31.86
KRH54662	Soybean	nucleus	44.96	30.31
KRH74752	Soybean	nucleus	43.83	29.94
KRH05918	Soybean	nucleus	45.96	27.07
KRH17401	Soybean	nucleus	45.96	26.93
KRH72171	Soybean	nucleus	29.79	23.33
KRH23170	Soybean	nucleus	39.57	21.95
KRH10165	Soybean	nucleus	39.43	21.86
KRH38164	Soybean	nucleus	31.77	20.33
KRH32860	Soybean	mitochondrion, nucleus, plastid	29.65	20.29
KRG90929	Soybean	plastid	30.92	19.14
KRH41772	Soybean	plastid	30.92	18.52
KRH60477	Soybean	plastid	30.92	18.47
KRH44757	Soybean	plastid	30.07	18.26
KRH13104	Soybean	mitochondrion	10.5	17.29
KRH76262	Soybean	nucleus	32.2	17.18
KRH65271	Soybean	nucleus	32.06	17.1
KRH73592	Soybean	nucleus	27.23	16.52
KRH14525	Soybean	nucleus	26.95	16.32
KRH01863	Soybean	nucleus	31.35	15.37
KRG97543	Soybean	nucleus, plastid	32.77	13.36
KRH31333	Soybean	nucleus, plastid	32.34	13.13

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100815345	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	EMBL:ACUP02000827	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	EnsemblPlantsGene:GLYMA_02G119000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K7K7U5	EnsemblPlants:KRH70930
ProteinID:KRH70930	ProteinID:KRH70930.1	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0002337996	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:11726750..11736817

Molecular Weight (calculated)

79350.9 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.241

Length

705 amino acids

Sequence
(BLAST)

001: MPSVPRGNFS NRQTQFSERR QKIIQQRKSL PITPVEKRLV EEVRKHDVLI IVGETGSGKT TQIPQFLFDA GFCRDGRVIG ITQPRRVAAV TVAKRVAEEC
101: GVELGQKVGY SVRFDDATSG STRIKYMTDG LLLREALLDP YLSKYSVIIV DEAHERTVHT DVLMGLLKNV QLARSSSVSG GQGLIFGNKN MNKLLEKEND
201: QSGSFLKKPH HEKYAPLKLI IMSASLDARA FSEYFGGAKA VHIQGRQFPV DIFYTRDAET DYLDASLITI FQIHLEEGPG DILVFLTGQE EIESVERLIN
301: EKLPQLPQEN QKLLVVSIFA ALPSEQQMRV FAPAPSGFRK VILATNIAET SVTIPGIKYV IDPGFVKARS YDPGKGMESL IIIPASKSQA LQRSGRAGRE
401: GPGKCFRLYP EREFEKLEDS TMPEIKRCNL SNVILQLKAL GVDDILGFDF IEKPSRAAII KSLEQLFLLG ALTDECQLSD PVGHQMARLP LDPLYSKALI
501: LASQFNCLEE MLITVALLSV ESIFYSPRDK LEEARTATKC FSSPEGDHIT LINVYRASND FLEKRSMEMN TAKTEKVYRK WCKENFINSR SLRHARDIHR
601: QIQGHVEQMG LNLSSCGDDM LQFRRCLAAS FFLNAAVKQP DGTYRTLASG QVVQIHPSSV LFRQKPECVI FNELVQTNNK YVRNLTRVDY LWLTELAPQY
701: YAMHN

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.