Factsheet for VIT_01s0137g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70930	Soybean	nucleus	73.83	76.03
KRH75071	Soybean	nucleus	73.42	75.6
Os06t0192500-02	Rice	mitochondrion	41.46	73.77
PGSC0003DMT400009842	Potato	mitochondrion	38.29	73.74
Solyc09g008120.2.1	Tomato	nucleus	71.9	73.42
KXG22666	Sorghum	nucleus	69.97	72.06
TraesCS7A01G156700.1	Wheat	plastid	70.11	71.39
TraesCS7D01G157100.1	Wheat	plastid	69.83	71.11
TraesCS7B01G060800.1	Wheat	plastid	69.56	70.83
Zm00001d011963_P002	Maize	plasma membrane	68.73	69.21
Bra011023.1-P	Field mustard	nucleus	65.01	68.51
CDY36075	Canola	nucleus	63.5	68.4
AT1G26370.1	Thale cress	plastid	66.8	67.64
CDX85017	Canola	cytosol, plastid	67.22	67.59
CDY16154	Canola	nucleus, plastid	67.08	67.36
CDY34567	Canola	nucleus	61.29	67.12
CDY32702	Canola	nucleus	63.36	66.47
Bra024720.1-P	Field mustard	nucleus	67.08	66.17
CDY02818	Canola	nucleus	60.19	65.81
HORVU7Hr1G032080.3	Barley	plastid	70.11	62.15
GSMUA_Achr5P05110_001	Banana	nucleus	72.86	52.07
VIT_10s0003g00810.t01	Wine grape	nucleus	40.36	42.22
VIT_07s0005g01770.t01	Wine grape	nucleus	40.77	40.66
VIT_01s0010g02780.t01	Wine grape	nucleus	31.96	36.25
VIT_01s0010g02920.t01	Wine grape	nucleus	38.84	32.23
VIT_17s0000g06950.t01	Wine grape	nucleus	42.7	29.41
VIT_08s0056g00470.t01	Wine grape	nucleus	44.49	27.49
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	30.58	21.66
VIT_17s0000g03030.t01	Wine grape	nucleus	30.17	20.72
VIT_01s0011g04360.t01	Wine grape	plastid	29.89	18.37
VIT_07s0005g00860.t01	Wine grape	nucleus	32.51	17.87
VIT_12s0028g01050.t01	Wine grape	nucleus	27.55	16.25
VIT_12s0035g00800.t01	Wine grape	nucleus	27.0	14.32
VIT_07s0191g00210.t01	Wine grape	nucleus	29.2	12.21

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100262984	wikigene:100262984	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	ProteinID:CCB43988
ProteinID:CCB43988.1	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	UniProt:F6GVM6	EMBL:FN594954	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0043484	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100262984	wikigene:LOC100262984	InterPro:P-loop_NTPase	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF85	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00021080B8
ArrayExpress:VIT_01s0137g00640	EnsemblPlantsGene:VIT_01s0137g00640	EnsemblPlants:VIT_01s0137g00640.t01	RefSeq:XP_002282341	RefSeq:XP_002282341.2	RefSeq:XP_002282341.3
RefSeq:XP_019075489.1	RefSeq:XP_019075490.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:7153788..7167857

Molecular Weight (calculated)

81836.0 Da

IEP (calculated)

8.585

GRAVY (calculated)

-0.263

Length

726 amino acids

Sequence
(BLAST)

001: MTNNNNNNIP VNEMHWPLVD KADKKKPKIR DLPYCQGNRK QRLEQQRKAL PIASVEKRLV EEVQKNDTLI IVGETGSGKT TQLPQFLLNG GFCHDGKIIG
101: ITQPRRVAAV TVAKRVAEEC GVELGQKVGY SIRFEDVTSS STRIKYMTDG LLLREALLDP FLSRYSVIIV DEAHERTIHT DVLLGLLKNV QNARSRSINK
201: CLNIENTEAN YGKLLKREND ANCVSILKRC QGVKFPSLKL IIMSASLDAR GFSEYFGGAR SVYIQGRQFP VDIFYTHHAE PDYVDAALIT IFQIHLEEGP
301: GDILVFLTGQ EEIESVERLV QERLRQLPEG SQKLLTVPIF SSLPSEQQMK AFMPAPAGFR KVILATNIAE TSVTIPGIKY VIDPGVVKAR TYNAHTGIES
401: LDIVKTSKAQ ALQRSGRAGR ERPGKCFRLY PESEFGQLAD STEPEIKRCN LSNVILQLKA LGVDDIIGFD FLEKPSRMAI VKSLEQLFLL GAITDDSKLS
501: DPIGHQMARL PLDPVYSKAL ILASQFNCLE EMLIAVAMLS VESIFYTPRE KLEEARTAMK CFSSPEGDHI TLINVYRASD EFVEKIKQGN DKEKTEKKLR
601: KWCKENFINS RSLRHARDIH SQIRRHAEQM GLCVASCGDD MLQFRRCLAA SFFLNAALKQ PEGTYRALAS GQSVRIHPSS VLFRTKPECI IFNELVQTNH
701: CYIRNITRID FLWLPELAPQ YYAVQN

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.