Factsheet for VIT_08s0032g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P12550_001	Banana	cytosol	38.05	85.71
PGSC0003DMT400055058	Potato	nucleus	69.56	83.49
Zm00001d045376_P001	Maize	cytosol	26.24	81.52
Solyc01g006970.2.1	Tomato	nucleus	81.46	80.99
KRH72171	Soybean	nucleus	70.05	79.78
KRH32860	Soybean	mitochondrion, nucleus, plastid	78.15	77.77
HORVU1Hr1G039880.1	Barley	nucleus	70.34	76.3
Bra023043.1-P	Field mustard	nucleus	73.85	76.08
Os10t0471350-01	Rice	nucleus	73.27	75.25
AT2G35920.3	Thale cress	plastid	74.83	74.68
CDX84588	Canola	plastid, vacuole	74.34	73.62
CDX79642	Canola	nucleus, vacuole	74.34	73.62
TraesCS1A01G151100.1	Wheat	nucleus	73.27	72.98
TraesCS1D01G148100.2	Wheat	nucleus	73.27	72.98
TraesCS1B01G168700.3	Wheat	nucleus	73.37	72.94
Zm00001d032735_P001	Maize	plastid	73.37	72.73
KXG38358	Sorghum	nucleus	72.78	72.01
Zm00001d019056_P001	Maize	nucleus	14.05	72.0
GSMUA_Achr8P12540_001	Banana	nucleus	33.95	63.04
VIT_17s0000g03030.t01	Wine grape	nucleus	43.71	42.38
VIT_01s0011g04360.t01	Wine grape	plastid	44.68	38.78
VIT_07s0005g01770.t01	Wine grape	nucleus	23.41	32.97
VIT_10s0003g00810.t01	Wine grape	nucleus	20.88	30.84
VIT_01s0010g02780.t01	Wine grape	nucleus	19.22	30.78
VIT_01s0137g00640.t01	Wine grape	nucleus	21.66	30.58
VIT_12s0028g01050.t01	Wine grape	nucleus	32.49	27.05
VIT_01s0010g02920.t01	Wine grape	nucleus	22.63	26.51
VIT_12s0035g00800.t01	Wine grape	nucleus	33.76	25.27
VIT_17s0000g06950.t01	Wine grape	nucleus	24.39	23.72
VIT_08s0056g00470.t01	Wine grape	nucleus	26.44	23.06
VIT_07s0005g00860.t01	Wine grape	nucleus	20.78	16.12
VIT_07s0191g00210.t01	Wine grape	nucleus	19.61	11.57

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100252028	wikigene:100252028	Gene3D:3.40.50.300	MapMan:35.1	EMBL:AM487368
ProteinID:CAN84132	ProteinID:CAN84132.1	ProteinID:CCB61573	ProteinID:CCB61573.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	UniProt:F6I3K9	EMBL:FN596742	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100252028
wikigene:LOC100252028	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF191	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0001985AA9	ArrayExpress:VIT_08s0032g01230	EnsemblPlantsGene:VIT_08s0032g01230
EnsemblPlants:VIT_08s0032g01230.t01	unigene:Vvi.9924	RefSeq:XP_002264021	RefSeq:XP_002264021.2	RefSeq:XP_002264021.3	SEG:seg

Description

No Description!

Coordinates

chr8:+:5958489..6009269

Molecular Weight (calculated)

114187.0 Da

IEP (calculated)

7.967

GRAVY (calculated)

-0.269

Length

1025 amino acids

Sequence
(BLAST)

0001: MSLRCLSVNC SFFSKHLSSS PKEFALLFRI SISTMSYRPN YQGGRRGAGG RGGGGRRGGG RGGGGGGRGE QRWWDPVWRA ERLRQQAAEV EVLNEDEWWG
0101: TMEQMKRGGE QEMVIKRTYS RGDHQILSDM AYQLGLYFHA YNKGKTLVVS KVPLPNYRAD LDERHGSTQK EIRMSTETEI RVGNLLDSSQ EVVTVGGPSA
0201: VSSQGVKPSS SGASITSAVS KLEIDTAKEG LSVELKQNHE KMKGSNSVKM MQAFREKLPA FKMKSEFLKA VADNQVLVVS GETSCGKTTQ LPQFILEEEI
0301: SSLRGADCNI ICTQPRRISA ISVAARISSE KGESLGETVG YQIRLEAKRS AQTRLLFCTT GVLLRQLVQD PDLTGVSHLL VDEIHERGMN EDFLLIILHD
0401: LLPRRPDLRL ILMSATINAD LFSKYFGNAP TIHIPGFTFP VAELFLEDLL EKTRYNIKSE FDNFHGNPKW RKRQQDSKKD PLMELFEDTD IDLHYKNYSP
0501: YTRRSLEAWS GSQLDLGLVE ATIEHICRHE GEGAILVFLT GWDDISNLLD KVKGNNFLGD PRKNLVLPLH GSMPTINQRE IFDRPPSNMR KIVLATNIAE
0601: SSITIDDVVY VIDCGKAKET SYDALNKLAC LLPSWISKAS AHQRRGRAGR VQPGVCYRLY PKMIHEAMLQ FQLPEILRTP LQELCLNIKS LQLGKIGSFL
0701: SKALQPPDPL SVQNAVELLK TIGALDDMEE LTPLGRHLCK LPLDPNIGKM LLMGSIFQCL NPALTIAAAL AHRDPFVLPI NRKEEANAAK RSFAGDSCSD
0801: HIALLNAFEG WKDAKCSGKE RDFCWENFLS PITLQMMDDM RNQFLDLLSD IGFVDKSKGA IAYNQYSNDL EMVCAILCAG LYPNVLQCKR RGKRTAFYTK
0901: EVGKVDIHPA SVNAGVHLFP LPYMVYSEKV KTASIFVRDS TNISDYSLLL FGGNLIPSET GEGIEMLGGY LHFSASKSVL ELIRKLRSEL DKLLKRKIEE
1001: PGLDISAEGK GVVAAVVELL HSQNV

Best Arabidopsis Sequence Match ( AT2G35920.1 )
(BLAST)

001: MPPHGPNSQG GRRGGGHSSG RRGGRGGGGR GGGGGGRGEQ RWWDPVWRAE RLRQQQAEME VLDENEWWNK IEQWKTGGEQ EMLIKRNFSR GDQQTLSDMA
101: LQMGLYFHAY NKGKALVVSK VPLPDYRADL DERHGSTQKE IKMSTETERK LGSLLKTTQE SGSSGASASA FNDQQDRTST LGLKRPDSAS KLPDSLEKEK
201: FSFALKERQE KLKATESVKA LKAFREKLPA FKMKEEFLNS VSQNQVLVVS GETGCGKTTQ LPQFILEEEI SSLRGADCNI ICTQPRRISA ISVASRISAE
301: RGESIGESVG YQIRLESKRS DQTRLLFCTT GVLLRRLIED PNLTNVSHLL VDEIHERGMN EDFLLIILRD LLPRRPDLRL ILMSATINAD MFSTYFGNSP
401: TMHIPGFTFP VAELFLEDVL EKSRYNIKSS DSGNYQGSSR GRRRESESKK DDLTTLFEDI DINSHYKSYS SATRNSLEAW SGAQIDVDLV EATIEHICRL
501: EGGGAILVFL TGWDEISKLL EKINMNNFLG DSSKFLVLPL HGSMPTVNQR EIFDRPPPNK RKIVLATNIA ESSITIDDVV YVVDCGKAKE TSYDALNKVA
601: CLLPSWISKA SAHQRRGRAG RVQAGVCYRL YPKVIYDAFP QYQLPEIIRT PLQELCLHIK SLQVGSIGSF LAKALQPPDA LAVENAIELL KTIGALNDVE
701: ELTPLGRHLC TLPVDPNIGK MLLIGAIFQC VNPALTIAAA LAYRSPFVLP LNRKEEADEA KRYFAGDSCS DHIALLKAYE GYRDAKRGGN EKDFCWQNFL
801: SPVTLRMMED MRNQFLDLLS DIGFVDKSKP NAYNQYSYDM EMISAVLCAG LYPNVVQCKR RGKRTAFYTK ELGKVDIHPG SVNARVNLFS LPYLVYSEKV
901: KTTSVYIRDS TNISDYALLM FGGNLIPSKT GEGIEMLGGY LHFSASKNIL ELIQRLRGEV DKLLNKKIED PSLDITVEGK GVVSAVVELL RSQKH

Arabidopsis Description

RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.