Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G151100.1 | Wheat | nucleus | 100.0 | 100.0 |
| HORVU1Hr1G039880.1 | Barley | nucleus | 90.77 | 98.84 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 98.64 | 98.45 |
| Zm00001d045376_P001 | Maize | cytosol | 29.06 | 90.61 |
| Os10t0471350-01 | Rice | nucleus | 87.46 | 90.18 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 38.97 | 88.13 |
| KXG38358 | Sorghum | nucleus | 86.01 | 85.42 |
| Zm00001d032735_P001 | Maize | plastid | 85.62 | 85.2 |
| Zm00001d019056_P001 | Maize | nucleus | 16.33 | 84.0 |
| PGSC0003DMT400055058 | Potato | nucleus | 64.33 | 77.52 |
| KRH72171 | Soybean | nucleus | 64.92 | 74.22 |
| VIT_08s0032g01230.t01 | Wine grape | nucleus, plastid | 72.98 | 73.27 |
| Solyc01g006970.2.1 | Tomato | nucleus | 73.28 | 73.13 |
| Bra023043.1-P | Field mustard | nucleus | 69.87 | 72.26 |
| KRH32860 | Soybean | mitochondrion, nucleus, plastid | 71.72 | 71.65 |
| CDX79642 | Canola | nucleus, vacuole | 70.46 | 70.05 |
| CDX84588 | Canola | plastid, vacuole | 70.07 | 69.66 |
| AT2G35920.3 | Thale cress | plastid | 69.19 | 69.33 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 34.5 | 64.31 |
| TraesCS5D01G397600.1 | Wheat | nucleus | 44.51 | 39.83 |
| TraesCS3D01G025600.1 | Wheat | mitochondrion, nucleus, plastid | 44.22 | 36.63 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 23.81 | 33.98 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 21.57 | 31.67 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 21.67 | 31.63 |
| TraesCS7D01G157100.1 | Wheat | plastid | 21.28 | 30.72 |
| TraesCS3D01G302800.2 | Wheat | plastid | 32.36 | 26.14 |
| TraesCS3D01G264900.1 | Wheat | plastid | 22.84 | 25.52 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 25.27 | 24.86 |
| TraesCS2D01G302700.1 | Wheat | plastid | 34.5 | 24.84 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 26.04 | 24.77 |
| TraesCS1D01G243400.1 | Wheat | nucleus | 24.68 | 23.94 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 26.63 | 21.26 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 23.32 | 17.11 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 20.89 | 16.21 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 20.99 | 16.16 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 21.28 | 13.07 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 21.87 | 12.89 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF191 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS1D01G148100 | EnsemblPlants:TraesCS1D01G148100.2 | TIGR:cd00046 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:204034820..204048118
Molecular Weight (calculated)
114888.0 Da
IEP (calculated)
9.160
GRAVY (calculated)
-0.315
Length
1029 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLLHSSGCRG SLLFRSGFPF PATTTRRNLR ALTTAAATPN MYRGGRGGGT NSQRGRGRGR GGGGRGGRGG GGGGRGEQRW WDPQWRAERL RQMASEVEKV
0101: DEHEWWNTIG QLREGSQQEL VVKKNFGRDG QNTLAHIAQR HGLYFNAYNK GKTLVFSKVP LPDYRADLDE RHGSSQNEIK MSNETERRVE NLLSRAQSNN
0201: NASASTSTVS MRQSLPSTST AVAESTTYVD KQKLSFQLRD MQRSKKMMPS ARSMQSFREK LPAFKAREEF LKAVAANQVL VISGETGCGK TTQLPQFILE
0301: EEIDNLRGAD CSIICTQPRR ISAISVAARV GSERGEELGE TVGYQIRLES KRSTQTRLLF CTTGVLLRKL VQEPDLVGVS HLLVDEIHER GMNEDFLIII
0401: LRDLLPRRPD LRLVLMSATI NAELFSKYFG DAPIMHIPGF TFPVAELFLE DILEKTQYKI KSERDNFQGN SRKKRLASVK NDPLADVFQD VDINKEYGNY
0501: SITTRQSLEA WSVTELDLSL VEGTIEYICR HEGEGAILVF LTGWDEISKL LDKIKGNNLL GNSNKFLVLP LHGSMPTVNQ REIFDRAPAN MRKIVLATNI
0601: AESSITIDDV VYVIDCGKAK ETSYDALNKL ACLLPSWISK ASAHQRRGRA GRVQPGVCYR LYPKVIHDAM PQFQLPEILR TPLQELCLTI KSLQLGAVAS
0701: FLAKSLQPPD PLSVKNAIEL LKTIGALDDL EELTYLGRHL CTLPLDPNIG KMLLIGSVFQ CLDPALTIAA ALAYRNPFVL PIDRKEEADA VKRSFAGDSC
0801: SDHIALLKAF EAWKEAKRSG RERSFCWENF LSPMTLKMMD DMRNQFFDLL SDIGFVSKTR GVKAYNHYGK DLEMVSAVLC AGLYPNVIQC KRRGKRTAFY
0901: TKDVGKVDIH PSSVNAGVQQ FPLPYLVYSE KVKTASIYVR DSTNISDYAL LLFGGSLSPS NTGEGIEMLA GYLHFSAPKR IIELIQRLRG ELDKLLQRKI
1001: EEPALDIFSE GKGVVAAAIE LLHSQNIYH
0101: DEHEWWNTIG QLREGSQQEL VVKKNFGRDG QNTLAHIAQR HGLYFNAYNK GKTLVFSKVP LPDYRADLDE RHGSSQNEIK MSNETERRVE NLLSRAQSNN
0201: NASASTSTVS MRQSLPSTST AVAESTTYVD KQKLSFQLRD MQRSKKMMPS ARSMQSFREK LPAFKAREEF LKAVAANQVL VISGETGCGK TTQLPQFILE
0301: EEIDNLRGAD CSIICTQPRR ISAISVAARV GSERGEELGE TVGYQIRLES KRSTQTRLLF CTTGVLLRKL VQEPDLVGVS HLLVDEIHER GMNEDFLIII
0401: LRDLLPRRPD LRLVLMSATI NAELFSKYFG DAPIMHIPGF TFPVAELFLE DILEKTQYKI KSERDNFQGN SRKKRLASVK NDPLADVFQD VDINKEYGNY
0501: SITTRQSLEA WSVTELDLSL VEGTIEYICR HEGEGAILVF LTGWDEISKL LDKIKGNNLL GNSNKFLVLP LHGSMPTVNQ REIFDRAPAN MRKIVLATNI
0601: AESSITIDDV VYVIDCGKAK ETSYDALNKL ACLLPSWISK ASAHQRRGRA GRVQPGVCYR LYPKVIHDAM PQFQLPEILR TPLQELCLTI KSLQLGAVAS
0701: FLAKSLQPPD PLSVKNAIEL LKTIGALDDL EELTYLGRHL CTLPLDPNIG KMLLIGSVFQ CLDPALTIAA ALAYRNPFVL PIDRKEEADA VKRSFAGDSC
0801: SDHIALLKAF EAWKEAKRSG RERSFCWENF LSPMTLKMMD DMRNQFFDLL SDIGFVSKTR GVKAYNHYGK DLEMVSAVLC AGLYPNVIQC KRRGKRTAFY
0901: TKDVGKVDIH PSSVNAGVQQ FPLPYLVYSE KVKTASIYVR DSTNISDYAL LLFGGSLSPS NTGEGIEMLA GYLHFSAPKR IIELIQRLRG ELDKLLQRKI
1001: EEPALDIFSE GKGVVAAAIE LLHSQNIYH
0001: MQQSLSCFST LRFLLPFSSK LSPLRPLFHT AAMPPHGPNS QGGRRGGGHS SGRRGGRGGG GRGGGGGGRG EQRWWDPVWR AERLRQQQAE MEVLDENEWW
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH
Arabidopsis Description
RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.