Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G392800.1 | Wheat | nucleus | 99.57 | 99.57 |
| TraesCS5A01G387700.2 | Wheat | golgi, nucleus | 99.3 | 98.87 |
| HORVU5Hr1G094990.5 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 98.35 | 98.35 |
| Os03t0748800-01 | Rice | mitochondrion | 92.87 | 92.87 |
| KXG37551 | Sorghum | nucleus, vacuole | 92.0 | 91.84 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 90.61 | 86.91 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 80.78 | 79.74 |
| KRH44757 | Soybean | plastid | 77.3 | 76.57 |
| AT5G04895.1 | Thale cress | mitochondrion | 76.17 | 75.45 |
| Solyc01g006710.2.1 | Tomato | mitochondrion | 76.35 | 75.43 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 76.26 | 75.34 |
| Bra009414.1-P | Field mustard | mitochondrion | 75.22 | 74.89 |
| CDX98799 | Canola | mitochondrion | 75.13 | 74.87 |
| CDX70187 | Canola | mitochondrion | 75.22 | 74.83 |
| KRH13104 | Soybean | mitochondrion | 24.43 | 65.65 |
| TraesCS3D01G025600.1 | Wheat | mitochondrion, nucleus, plastid | 59.13 | 54.75 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 39.83 | 44.51 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 20.09 | 32.04 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 18.78 | 30.64 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 18.52 | 30.39 |
| TraesCS7D01G157100.1 | Wheat | plastid | 18.35 | 29.59 |
| TraesCS3D01G264900.1 | Wheat | plastid | 20.35 | 25.41 |
| TraesCS3D01G302800.2 | Wheat | plastid | 26.43 | 23.86 |
| TraesCS2D01G302700.1 | Wheat | plastid | 29.48 | 23.72 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 21.83 | 23.2 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 20.61 | 22.66 |
| TraesCS1D01G243400.1 | Wheat | nucleus | 20.61 | 22.34 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 22.78 | 20.33 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 21.22 | 17.39 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 19.22 | 16.53 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 18.7 | 16.21 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 22.09 | 15.16 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 22.17 | 14.6 |
| PGSC0003DMT400041647 | Potato | cytosol | 2.17 | 6.81 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.30.160.20 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:P-loop_NTPase | PFAM:PF00035 | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF103 | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | SUPFAM:SSF54768 | EnsemblPlantsGene:TraesCS5D01G397600 | EnsemblPlants:TraesCS5D01G397600.1 | TIGR:cd00046 | TIGR:cd00048 |
| TIGR:cd00079 | InterPro:dsRBD_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:-:464276811..464283322
Molecular Weight (calculated)
129846.0 Da
IEP (calculated)
8.711
GRAVY (calculated)
-0.406
Length
1150 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRRVLRRGLG ILLVPLPGPL SRPPPPPIPL AALLLLPRRL DAFSRRTFCG YSGGRAVEQF SDDEYDHEYE DHRPSSSVAN IDEWRWKLSM LQRNAEEQEI
0101: ISRDRRDRRD YDQIANLAKR MGLYSELYGK VIVASKVPLP NYRPDLDDKR PQREVVIPLS LQRRVEGFVQ EHLDRSLLPF DKDGGKTESG SEKAEQVNLD
0201: EKQDPLLDES VMEKILQRKS LRMRNFQRSW QESPEGAKMV EFRKSLPAYK EKERLLAAIA RNQVIVISGE TGCGKTTQLP QFVLESEIES GRGAFCNIIC
0301: TQPRRISAMA VAERVSTERG ENLGESVGYK VRLEGIRGKD THLLFCTSGI LLRRLLSDRN LNGVSHVFVD EIHERGMNED FLLIVLKDLL SRRRDLRLIL
0401: MSATLNAELF SSYFGGAPTI HIPGFTHPVR AHFLEDILER TGYKMTASNQ LDDYGQDKVW KTQRQLLPRK RKNQITTLVE DALQNSNFET YGSRTRDSLA
0501: NWNPDCIGFN LIEAVLCHIC RKERAGAVLV FMTGWDDISS LKDQLKAHPL LGDPNRVLLL ACHGSMATSE QRLIFDKAPP NVRKVVLATN MAEASITIND
0601: IVFVMDCGKA KETTYDALNN TPCLLPSWIS KASSRQRRGR AGRVQPGECY HLYPRCVYDA FAEYQLPELL RTPLNSLCLQ IKSLQVDSIG EFLSAALQPP
0701: EPRAVQNAVE FLKMIGSLDE NENLTDLGRY LSMLPVDPKL GKMLIMGAVF RCIDPILTVV AGLSARDPFL LPQDKKDLAG TAKSRFSAKD YSDHMALVRA
0801: YEGWKDAERE GSGYEYCWRN FLSAQTLQAI HSLRKQFSYI LKDAGLIDSD ANTNNSLSHN QSLVRGVICS GLFPGISSVV HRENSMSFKT MDDGQVLVYA
0901: NSVNAKYQTI PYPWLVFGEK VKVNAVFIRD STGVSDSILI LFGGAVTKGS AAGHLKMLDG YIDLFMDPSL SECYLQLKEE LDKLVQKKLE DPTFDIHKEG
1001: KYILFAAQEL AAGDLCEGRF VFGRETSRAR LRDNEDGKSN IIKDGMNPKS LLQTLLMRAG HTPPKYKTKH LKTNEFRAMV EFKGMQFVGK PKRNKQVAER
1101: DAAIEALGWL TQTSGTKLQD EGDDSPLDLT DNMLKLLSRP RKRTRNNPKK
0101: ISRDRRDRRD YDQIANLAKR MGLYSELYGK VIVASKVPLP NYRPDLDDKR PQREVVIPLS LQRRVEGFVQ EHLDRSLLPF DKDGGKTESG SEKAEQVNLD
0201: EKQDPLLDES VMEKILQRKS LRMRNFQRSW QESPEGAKMV EFRKSLPAYK EKERLLAAIA RNQVIVISGE TGCGKTTQLP QFVLESEIES GRGAFCNIIC
0301: TQPRRISAMA VAERVSTERG ENLGESVGYK VRLEGIRGKD THLLFCTSGI LLRRLLSDRN LNGVSHVFVD EIHERGMNED FLLIVLKDLL SRRRDLRLIL
0401: MSATLNAELF SSYFGGAPTI HIPGFTHPVR AHFLEDILER TGYKMTASNQ LDDYGQDKVW KTQRQLLPRK RKNQITTLVE DALQNSNFET YGSRTRDSLA
0501: NWNPDCIGFN LIEAVLCHIC RKERAGAVLV FMTGWDDISS LKDQLKAHPL LGDPNRVLLL ACHGSMATSE QRLIFDKAPP NVRKVVLATN MAEASITIND
0601: IVFVMDCGKA KETTYDALNN TPCLLPSWIS KASSRQRRGR AGRVQPGECY HLYPRCVYDA FAEYQLPELL RTPLNSLCLQ IKSLQVDSIG EFLSAALQPP
0701: EPRAVQNAVE FLKMIGSLDE NENLTDLGRY LSMLPVDPKL GKMLIMGAVF RCIDPILTVV AGLSARDPFL LPQDKKDLAG TAKSRFSAKD YSDHMALVRA
0801: YEGWKDAERE GSGYEYCWRN FLSAQTLQAI HSLRKQFSYI LKDAGLIDSD ANTNNSLSHN QSLVRGVICS GLFPGISSVV HRENSMSFKT MDDGQVLVYA
0901: NSVNAKYQTI PYPWLVFGEK VKVNAVFIRD STGVSDSILI LFGGAVTKGS AAGHLKMLDG YIDLFMDPSL SECYLQLKEE LDKLVQKKLE DPTFDIHKEG
1001: KYILFAAQEL AAGDLCEGRF VFGRETSRAR LRDNEDGKSN IIKDGMNPKS LLQTLLMRAG HTPPKYKTKH LKTNEFRAMV EFKGMQFVGK PKRNKQVAER
1101: DAAIEALGWL TQTSGTKLQD EGDDSPLDLT DNMLKLLSRP RKRTRNNPKK
0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K
Arabidopsis Description
ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.