Factsheet for TraesCS5A01G387700.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus

Predictor Summary:

mitochondrion 3
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G397600.1	Wheat	nucleus	98.87	99.3
TraesCS5B01G392800.1	Wheat	nucleus	98.79	99.22
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	97.58	98.0
Os03t0748800-01	Rice	mitochondrion	92.21	92.61
KXG37551	Sorghum	nucleus, vacuole	91.34	91.58
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	90.13	86.82
GSMUA_Achr4P07530_001	Banana	mitochondrion	80.43	79.74
KRH44757	Soybean	plastid	76.88	76.49
AT5G04895.1	Thale cress	mitochondrion	75.84	75.45
Solyc01g006710.2.1	Tomato	mitochondrion	76.02	75.43
PGSC0003DMT400055091	Potato	mitochondrion	75.93	75.34
Bra009414.1-P	Field mustard	mitochondrion	74.81	74.81
CDX98799	Canola	mitochondrion	74.72	74.78
CDX70187	Canola	mitochondrion	74.81	74.74
KRH13104	Soybean	mitochondrion	24.33	65.65
TraesCS3A01G021300.1	Wheat	extracellular	59.83	55.55
TraesCS1A01G151100.1	Wheat	nucleus	39.57	44.41
TraesCS4A01G124200.2	Wheat	cytosol	20.0	32.13
TraesCS4A01G239500.2	Wheat	nucleus	18.7	30.64
TraesCS3A01G131800.1	Wheat	nucleus	18.44	30.39
TraesCS7A01G156700.1	Wheat	plastid	18.27	29.59
TraesCS3A01G298900.1	Wheat	nucleus	25.45	25.02
TraesCS2A01G304100.1	Wheat	nucleus, plastid	29.87	24.14
TraesCS1A01G243400.1	Wheat	nucleus	20.52	22.36
TraesCS4A01G158200.1	Wheat	nucleus	22.86	21.39
TraesCS2A01G233700.1	Wheat	nucleus	21.21	19.4
TraesCS6A01G178200.1	Wheat	nucleus	18.44	17.33
TraesCS6A01G299400.2	Wheat	nucleus	18.61	16.21
TraesCS5A01G074100.1	Wheat	nucleus	21.73	14.94
TraesCS3A01G111000.1	Wheat	nucleus	21.73	14.31
TraesCS2A01G164100.1	Wheat	nucleus	21.82	13.91
PGSC0003DMT400041647	Potato	cytosol	2.16	6.81

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF103	SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	SUPFAM:SSF54768	EnsemblPlantsGene:TraesCS5A01G387700	EnsemblPlants:TraesCS5A01G387700.2	TIGR:cd00046	TIGR:cd00048
TIGR:cd00079	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:-:584672829..584679548

Molecular Weight (calculated)

130461.0 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.403

Length

1155 amino acids

Sequence
(BLAST)

0001: MRRVLRRGLG ILLVPLPGPL SRPPPIPLAA LLLLPRRLDA FFRRPFCDYS GGRAVEQFSD DEYDHEYEDH RPSSSVANID EWRWKLSMLQ RNAEEQEIIS
0101: RDRRDRRDYD QIANLAKRMG LYSELYGKVI VASKVPLPNY RPDLDDKRPQ REASPCNPMV VIPLSLQRRV EGFVQEHLDR SLLPFNKDGG KSESGSEKAE
0201: HVNLDEKQDP LLDESVMEKI LQRKSLRMRN FQRSWQESPE GAKMVEFRKS LPAYKEKERL LAAIARNQVI VISGETGCGK TTQLPQFVLE SEIESGRGAF
0301: CNIICTQPRR ISAMAVAERV STERGENLGE SVGYKVRLEG IRGKDTHLLF CTSGILLRRL LSDRNLNGVS HVFVDEIHER GMNEDFLLIV LKDLLSRRRD
0401: LRLILMSATL NAELFSSYFG GAPTIHIPGF THPVRAHFLE DILERTGYKM TASNQLDDYG QDKVWKTQRQ LLPRKRKNQI TTLVEDALQN SNFETYGSRT
0501: RDSLANWNPD CIGFNLIEAV LCHICRKERA GAVLVFMTGW DDISSLKDQL KAHPLLGDPN RVLLLACHGS MATSEQRLIF DKAPPNVRKV VLATNMAEAS
0601: ITINDIVFVM DCGKAKETTY DALNNTPCLL PSWISKASSR QRRGRAGRVQ PGECYHLYPR CVYDAFAEYQ LPELLRTPLN SLCLQIKSLQ VDSIGEFLSA
0701: ALQPPEPRAV QNAVEFLKMI GSLDENENLT DLGRYLSMLP VDPKLGKMLI MGAVFRCIDP ILTVVAGLSA RDPFLLPQDK KDLAGTAKSR FSAKDYSDHM
0801: ALVRAYEGWK DAEREGSGYE YCWRNFLSAQ TLQAIHSLRK QFSYILKDAG LIDSDANTNN SLSHNQSLVR GVICSGLFPG ISSVVHRENS MSFKTMDDGQ
0901: VLVYANSVNA KYQTIPYPWL VFGEKVKVNA VFIRDSTGVS DSILILFGGA VTKGSAAGHL KMLDGYIDLF MDPSLSECYL QLKEELDKLV QKKLEDPTFD
1001: IHKEGKYILF AAQELAAGDL CEGRFVFGRE TSRARLRDNE DGKSNIIKDG MNPKSLLQTL LMRAGHTPPK YKTKHLKTNE FRAMVEFKGM QFVGKPKRNK
1101: QVAERDAAIE ALGWLTQTSG TKLQDEGDDS PLDLTDNMLK LLSRPRKRTR NNPKK

Best Arabidopsis Sequence Match ( AT5G04895.1 )
(BLAST)

0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K

Arabidopsis Description

ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.