Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G190100.1 | Wheat | nucleus | 93.54 | 97.69 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 93.98 | 97.48 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 93.15 | 92.44 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 77.03 | 83.04 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 79.02 | 81.58 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 55.88 | 78.63 |
| OQU90279 | Sorghum | nucleus | 63.17 | 75.41 |
| Zm00001d022176_P002 | Maize | nucleus | 69.41 | 71.75 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 41.8 | 61.44 |
| PGSC0003DMT400041805 | Potato | nucleus | 45.44 | 50.74 |
| KRG97543 | Soybean | nucleus, plastid | 48.37 | 50.67 |
| KRH31333 | Soybean | nucleus, plastid | 47.98 | 50.06 |
| Solyc04g014210.2.1 | Tomato | nucleus | 47.1 | 49.31 |
| Solyc11g010310.1.1 | Tomato | nucleus | 46.38 | 49.27 |
| PGSC0003DMT400060759 | Potato | nucleus | 46.83 | 49.05 |
| AT5G10370.1 | Thale cress | nucleus | 45.33 | 46.25 |
| Bra006057.1-P | Field mustard | plastid | 44.73 | 46.15 |
| CDX81170 | Canola | plastid | 44.67 | 45.89 |
| AT4G01020.1 | Thale cress | nucleus | 45.22 | 45.83 |
| CDX78376 | Canola | plastid | 44.45 | 45.82 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 43.4 | 45.25 |
| CDX69841 | Canola | plastid | 43.79 | 44.88 |
| Bra009038.1-P | Field mustard | plastid | 43.79 | 44.88 |
| CDX96996 | Canola | nucleus | 43.62 | 44.66 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 12.31 | 31.02 |
| TraesCS4A01G239500.2 | Wheat | nucleus | 12.04 | 30.92 |
| TraesCS3A01G131800.1 | Wheat | nucleus | 11.82 | 30.53 |
| TraesCS7A01G156700.1 | Wheat | plastid | 11.26 | 28.61 |
| TraesCS1A01G243400.1 | Wheat | nucleus | 13.2 | 22.55 |
| TraesCS5A01G387700.2 | Wheat | golgi, nucleus | 13.91 | 21.82 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 12.37 | 21.77 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 13.42 | 19.69 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 13.69 | 19.64 |
| TraesCS3A01G021300.1 | Wheat | extracellular | 13.36 | 19.45 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 11.43 | 17.62 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 12.31 | 16.82 |
| TraesCS6A01G178200.1 | Wheat | nucleus | 11.37 | 16.76 |
| TraesCS2A01G304100.1 | Wheat | nucleus, plastid | 12.64 | 16.03 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom |
| InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00271 |
| PFAM:PF01485 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS50089 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | InterPro:RBD_domain_sf | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54928 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:TraesCS2A01G164100 | EnsemblPlants:TraesCS2A01G164100.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | TIGR:cd00046 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:116432388..116448502
Molecular Weight (calculated)
203342.0 Da
IEP (calculated)
7.095
GRAVY (calculated)
-0.220
Length
1811 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRQSNHCRPF RPPDWGSPPP HCRPHHQQSH RQPQSAPRFA VILFRAGPNI STPTATEIDA LVADLPSPPP DNLSVFSSGR DAARLLFRSL PAAAAAAREL
0101: WSLRLEGLHL LTPYLPNAAL AAHAFPLIAS LFASHASRLL DTDLVSRSAA RSAELAASIQ SLEHRLRSRN SFRDFDQLHL QKKTLEAEKD SVDAKIAEYK
0201: ASMSSIRRAM LRGTDEEEEV EEEGVDVFGI GEGEDVDFAR LHMMMLRECR RLNEGLPIYA YRRKILNHIF NNQVMTLIGE TGSGKSTQLV QFLADSGLAA
0301: NGSIVCTQPR KIAATSLARR VDEESNGCYK DNFVLSYSTF LNSQDLNSKI IFCTDSCLLH HCMNDTGLDG ISYIIVDEAH ERSLNTDLLL ALIKKKLLDR
0401: LDLHLIIMSA TADADKLADY FYGCQAFHVK GRNFPVEINY VPDVSVEGSS NAVPNSMCDA CATASYVNDV VRMVSIIHKN EEEGAVLAFL TSQLEVEWAC
0501: ENFSDASAVV LPMHGKLSHV EQSRVFRSYP GKRKIIFCTN MAETSLTIKE VKYVVDSGLA KESRFVPSSG LNVLKVNWIS QSSANQRAGR AGRTGAGKCY
0601: RLYSEADFSM MDVHQEPEIR KVHLGTAVLR ILALGVKDAR KFEFVDAPNP EAISMAVKNL EQLGAVKHRL NCFELTDTGR YLVKLGIEPR LGKIMLDCFD
0701: VGLRKEGVVL AAVMANSSNI FCRVGTDEEK HKADLQKVRL CHRDGDLFTL LAVYKKWEDG HDNRNMWCWQ NSINAKTMRR CQETISELEN CLKHELNIIV
0801: PSYWRWNPEA PTVHDKDLKR IILSSLTGNL AMFLGHERFG YQVISTGQVV NLHPSSSLLN YGIKSEWVVF TEILSVPNQY LVCVTAVDHD ALYTIHPVSF
0901: IKQLEEQKLQ IKVISGLGTN LLRRFCGKYG QNQQKIISRL KEDCRDDRIT VEINFQNNEV VLFATEQNME KVFCTVNSAL ECECKILRNE CLERNLFPGR
1001: PGSSPIALFG SGAEIKHLEL GGRYLTVEVL HQNAHDIDDK ELIFLVDSIG SGIANFHKST GSFRIASDGI KWGKFTFLKP ENAEDAVSKF NGIEFNGSSL
1101: KLVPVCTFDN RGLPFPAVRA KLCWPRRHSS GRALITCASG EAEFVVNDCF ALGIGGRYIK CRVSTKYENC VFAEGIPMHV TEPELYDAFR STTGRRILNI
1201: RLLRVKGNAI ASPSVSTCEE ELVREISPFM SNKSFPGQNF RVEVFPPEEN DSLTRATITF DGSLHREAAR ALDHLEGHFL PCCQPWQIIQ CNHVFHSTLS
1301: CPVRVYNVIS QEVASLLESF QSQKGVSYNF EKTENGIFRL KLTANATKTI ADLRRPLEIL MKGKTINHPD LTLSAVQLLL SRDGVAHLKS IEQETGTYIM
1401: YDRQSLNIKV FGHQDQMAAA EVKFVHALRQ LLEKKPLEIY LRGHNLPPDL MKKTVENFGV DLEGFNKEMP EIKVELHQHR HLLKVWGSKE DKRRVERMIS
1501: ELASFKHSSL VKLASENVGG KEDDQRVDYD EPSEDACPIC LCEIEDPFRL ESCGHMFCLA CLVDQCESAM KSHDGFPICC LKTGCKEPLL VIDLKHLLSN
1601: EKLEDLFRAS LRAFVASRAG MYRFCPTPDC QSIYQVAAPD AETKPFSCGA CYVEICTKCH FEYHPFISCE AYKEYKEDPD STLLEWRKGK ANVKSCPSCG
1701: YTIEKSDGCN HVECRCGSHI CWVCLENFRS SEECYGHLRL IRWITEFFLV MLTGLDRIIG PFSLETMGRG GPGACKRSKY SLLLSMLAER TIHEKLAAVT
1801: DLLMKMMSGK S
0101: WSLRLEGLHL LTPYLPNAAL AAHAFPLIAS LFASHASRLL DTDLVSRSAA RSAELAASIQ SLEHRLRSRN SFRDFDQLHL QKKTLEAEKD SVDAKIAEYK
0201: ASMSSIRRAM LRGTDEEEEV EEEGVDVFGI GEGEDVDFAR LHMMMLRECR RLNEGLPIYA YRRKILNHIF NNQVMTLIGE TGSGKSTQLV QFLADSGLAA
0301: NGSIVCTQPR KIAATSLARR VDEESNGCYK DNFVLSYSTF LNSQDLNSKI IFCTDSCLLH HCMNDTGLDG ISYIIVDEAH ERSLNTDLLL ALIKKKLLDR
0401: LDLHLIIMSA TADADKLADY FYGCQAFHVK GRNFPVEINY VPDVSVEGSS NAVPNSMCDA CATASYVNDV VRMVSIIHKN EEEGAVLAFL TSQLEVEWAC
0501: ENFSDASAVV LPMHGKLSHV EQSRVFRSYP GKRKIIFCTN MAETSLTIKE VKYVVDSGLA KESRFVPSSG LNVLKVNWIS QSSANQRAGR AGRTGAGKCY
0601: RLYSEADFSM MDVHQEPEIR KVHLGTAVLR ILALGVKDAR KFEFVDAPNP EAISMAVKNL EQLGAVKHRL NCFELTDTGR YLVKLGIEPR LGKIMLDCFD
0701: VGLRKEGVVL AAVMANSSNI FCRVGTDEEK HKADLQKVRL CHRDGDLFTL LAVYKKWEDG HDNRNMWCWQ NSINAKTMRR CQETISELEN CLKHELNIIV
0801: PSYWRWNPEA PTVHDKDLKR IILSSLTGNL AMFLGHERFG YQVISTGQVV NLHPSSSLLN YGIKSEWVVF TEILSVPNQY LVCVTAVDHD ALYTIHPVSF
0901: IKQLEEQKLQ IKVISGLGTN LLRRFCGKYG QNQQKIISRL KEDCRDDRIT VEINFQNNEV VLFATEQNME KVFCTVNSAL ECECKILRNE CLERNLFPGR
1001: PGSSPIALFG SGAEIKHLEL GGRYLTVEVL HQNAHDIDDK ELIFLVDSIG SGIANFHKST GSFRIASDGI KWGKFTFLKP ENAEDAVSKF NGIEFNGSSL
1101: KLVPVCTFDN RGLPFPAVRA KLCWPRRHSS GRALITCASG EAEFVVNDCF ALGIGGRYIK CRVSTKYENC VFAEGIPMHV TEPELYDAFR STTGRRILNI
1201: RLLRVKGNAI ASPSVSTCEE ELVREISPFM SNKSFPGQNF RVEVFPPEEN DSLTRATITF DGSLHREAAR ALDHLEGHFL PCCQPWQIIQ CNHVFHSTLS
1301: CPVRVYNVIS QEVASLLESF QSQKGVSYNF EKTENGIFRL KLTANATKTI ADLRRPLEIL MKGKTINHPD LTLSAVQLLL SRDGVAHLKS IEQETGTYIM
1401: YDRQSLNIKV FGHQDQMAAA EVKFVHALRQ LLEKKPLEIY LRGHNLPPDL MKKTVENFGV DLEGFNKEMP EIKVELHQHR HLLKVWGSKE DKRRVERMIS
1501: ELASFKHSSL VKLASENVGG KEDDQRVDYD EPSEDACPIC LCEIEDPFRL ESCGHMFCLA CLVDQCESAM KSHDGFPICC LKTGCKEPLL VIDLKHLLSN
1601: EKLEDLFRAS LRAFVASRAG MYRFCPTPDC QSIYQVAAPD AETKPFSCGA CYVEICTKCH FEYHPFISCE AYKEYKEDPD STLLEWRKGK ANVKSCPSCG
1701: YTIEKSDGCN HVECRCGSHI CWVCLENFRS SEECYGHLRL IRWITEFFLV MLTGLDRIIG PFSLETMGRG GPGACKRSKY SLLLSMLAER TIHEKLAAVT
1801: DLLMKMMSGK S
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.